Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0779 and Dshi_R0019 are separated by 75 nucleotides Dshi_R0019 and Dshi_0780 are separated by 18 nucleotides Dshi_0780 and Dshi_0781 are separated by 4 nucleotides Dshi_0781 and Dshi_0782 are separated by 73 nucleotides Dshi_0782 and Dshi_0783 are separated by 46 nucleotides
Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522
_0779
Dshi_R0019: Dshi_R0019 - tRNA-His (RefSeq), at 785,598 to 785,674
_R0019
Dshi_0780: Dshi_0780 - alpha/beta hydrolase fold (RefSeq), at 785,693 to 786,637
_0780
Dshi_0781: Dshi_0781 - Sterol-binding domain protein (RefSeq), at 786,642 to 786,929
_0781
Dshi_0782: Dshi_0782 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 787,003 to 787,569
_0782
Dshi_0783: Dshi_0783 - helicase domain protein (RefSeq), at 787,616 to 790,579
_0783
Position (kb)
785
786
787 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 784.882 kb on - strand, within Dshi_0779 at 785.031 kb on - strand, within Dshi_0779 at 785.234 kb on - strand, within Dshi_0779 at 785.288 kb on - strand, within Dshi_0779 at 785.330 kb on - strand, within Dshi_0779 at 785.477 kb on - strand at 785.891 kb on + strand, within Dshi_0780 at 785.896 kb on + strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.899 kb on - strand, within Dshi_0780 at 785.901 kb on + strand, within Dshi_0780 at 785.904 kb on - strand, within Dshi_0780 at 785.909 kb on - strand, within Dshi_0780 at 785.957 kb on - strand, within Dshi_0780 at 785.999 kb on - strand, within Dshi_0780 at 786.014 kb on - strand, within Dshi_0780 at 786.041 kb on - strand at 786.084 kb on - strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.180 kb on + strand, within Dshi_0780 at 786.192 kb on + strand, within Dshi_0780 at 786.194 kb on + strand, within Dshi_0780 at 786.198 kb on - strand, within Dshi_0780 at 786.274 kb on + strand, within Dshi_0780 at 786.362 kb on + strand, within Dshi_0780 at 786.370 kb on - strand, within Dshi_0780 at 786.406 kb on - strand, within Dshi_0780 at 786.523 kb on - strand, within Dshi_0780 at 786.600 kb on + strand at 786.621 kb on + strand at 787.008 kb on + strand at 787.018 kb on + strand at 787.026 kb on + strand at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.081 kb on + strand, within Dshi_0782 at 787.175 kb on - strand, within Dshi_0782 at 787.256 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.319 kb on - strand, within Dshi_0782 at 787.333 kb on + strand, within Dshi_0782 at 787.366 kb on - strand, within Dshi_0782 at 787.385 kb on + strand, within Dshi_0782 at 787.405 kb on - strand, within Dshi_0782 at 787.463 kb on - strand, within Dshi_0782 at 787.563 kb on + strand at 787.576 kb on - strand at 787.604 kb on + strand at 787.606 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 784,882 - Dshi_0779 0.33 -1.2 785,031 - Dshi_0779 0.49 -2.7 785,234 - Dshi_0779 0.70 -2.2 785,288 - Dshi_0779 0.75 -1.7 785,330 - Dshi_0779 0.80 -0.6 785,477 - -1.2 785,891 + Dshi_0780 0.21 -0.7 785,896 + Dshi_0780 0.21 -4.0 785,899 - Dshi_0780 0.22 -0.0 785,899 - Dshi_0780 0.22 +0.1 785,901 + Dshi_0780 0.22 +0.0 785,904 - Dshi_0780 0.22 +0.1 785,909 - Dshi_0780 0.23 +0.7 785,957 - Dshi_0780 0.28 +1.8 785,999 - Dshi_0780 0.32 -1.7 786,014 - Dshi_0780 0.34 +0.8 786,041 - +0.8 786,084 - Dshi_0780 0.41 +0.8 786,180 + Dshi_0780 0.52 +2.8 786,180 + Dshi_0780 0.52 +2.1 786,192 + Dshi_0780 0.53 +1.9 786,194 + Dshi_0780 0.53 -1.7 786,198 - Dshi_0780 0.53 -1.3 786,274 + Dshi_0780 0.61 -1.1 786,362 + Dshi_0780 0.71 +0.8 786,370 - Dshi_0780 0.72 -3.4 786,406 - Dshi_0780 0.75 +0.8 786,523 - Dshi_0780 0.88 +2.4 786,600 + +1.8 786,621 + -2.1 787,008 + +2.0 787,018 + +2.2 787,026 + -3.2 787,081 + Dshi_0782 0.14 -1.3 787,081 + Dshi_0782 0.14 -0.7 787,081 + Dshi_0782 0.14 -0.3 787,175 - Dshi_0782 0.30 -0.6 787,256 - Dshi_0782 0.45 -2.5 787,319 - Dshi_0782 0.56 +0.8 787,319 - Dshi_0782 0.56 -1.5 787,333 + Dshi_0782 0.58 +1.6 787,366 - Dshi_0782 0.64 -0.4 787,385 + Dshi_0782 0.67 -2.2 787,405 - Dshi_0782 0.71 -0.5 787,463 - Dshi_0782 0.81 -0.2 787,563 + -2.0 787,576 - +1.0 787,604 + -3.4 787,606 + -1.2
Or see this region's nucleotide sequence