Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0778

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0777 and Dshi_0778 are separated by 128 nucleotidesDshi_0778 and Dshi_0779 are separated by 120 nucleotides Dshi_0777: Dshi_0777 - threonyl-tRNA synthetase (RefSeq), at 782,164 to 784,128 _0777 Dshi_0778: Dshi_0778 - hypothetical protein (RefSeq), at 784,257 to 784,445 _0778 Dshi_0779: Dshi_0779 - transcriptional regulator, MarR family with acetyltransferase activity (RefSeq), at 784,566 to 785,522 _0779 Position (kb) 784 785Strain fitness (log2 ratio) -2 -1 0 1 2at 784.255 kb on + strandat 784.255 kb on + strandat 784.291 kb on + strand, within Dshi_0778at 784.451 kb on - strandat 784.459 kb on - strandat 784.567 kb on - strandat 784.882 kb on - strand, within Dshi_0779at 785.031 kb on - strand, within Dshi_0779at 785.234 kb on - strand, within Dshi_0779at 785.288 kb on - strand, within Dshi_0779at 785.330 kb on - strand, within Dshi_0779

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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784,255 + -2.1
784,255 + -0.5
784,291 + Dshi_0778 0.18 -0.6
784,451 - +0.8
784,459 - +1.8
784,567 - -0.7
784,882 - Dshi_0779 0.33 -1.2
785,031 - Dshi_0779 0.49 -2.7
785,234 - Dshi_0779 0.70 -2.2
785,288 - Dshi_0779 0.75 -1.7
785,330 - Dshi_0779 0.80 -0.6

Or see this region's nucleotide sequence