Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0592

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0591 and Dshi_0592 overlap by 4 nucleotidesDshi_0592 and Dshi_0593 overlap by 4 nucleotidesDshi_0593 and Dshi_0594 overlap by 8 nucleotides Dshi_0591: Dshi_0591 - rod shape-determining protein RodA (RefSeq), at 581,261 to 582,400 _0591 Dshi_0592: Dshi_0592 - Peptidoglycan glycosyltransferase (RefSeq), at 582,397 to 584,340 _0592 Dshi_0593: Dshi_0593 - putative rod shape-determining protein MreD (RefSeq), at 584,337 to 584,876 _0593 Dshi_0594: Dshi_0594 - rod shape-determining protein MreC (RefSeq), at 584,869 to 585,768 _0594 Position (kb) 582 583 584 585Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 582.363 kb on + strandat 584.899 kb on + strandat 584.933 kb on + strandat 584.933 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
582,363 + -1.9
584,899 + +2.2
584,933 + -2.9
584,933 + -3.1

Or see this region's nucleotide sequence