Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0586 and Dshi_0587 overlap by 29 nucleotides Dshi_0587 and Dshi_0588 are separated by 77 nucleotides Dshi_0588 and Dshi_0589 overlap by 4 nucleotides Dshi_0589 and Dshi_0590 are separated by 33 nucleotides
Dshi_0586: Dshi_0586 - permease (RefSeq), at 577,452 to 578,498
_0586
Dshi_0587: Dshi_0587 - putative transcriptional regulator, ArsR family (RefSeq), at 578,470 to 578,814
_0587
Dshi_0588: Dshi_0588 - uracil-DNA glycosylase superfamily (RefSeq), at 578,892 to 579,500
_0588
Dshi_0589: Dshi_0589 - hypothetical protein (RefSeq), at 579,497 to 580,282
_0589
Dshi_0590: Dshi_0590 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding (RefSeq), at 580,316 to 581,251
_0590
Position (kb) 578
579
580 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 577.969 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 577.974 kb on - strand, within Dshi_0586 at 578.001 kb on - strand, within Dshi_0586 at 578.073 kb on + strand, within Dshi_0586 at 578.224 kb on - strand, within Dshi_0586 at 578.256 kb on - strand, within Dshi_0586 at 578.324 kb on + strand, within Dshi_0586 at 578.387 kb on + strand, within Dshi_0586 at 578.402 kb on + strand at 578.402 kb on + strand at 578.410 kb on - strand at 578.424 kb on + strand at 578.437 kb on - strand at 578.452 kb on + strand at 578.480 kb on + strand at 578.488 kb on - strand at 578.584 kb on - strand, within Dshi_0587 at 578.628 kb on + strand, within Dshi_0587 at 578.701 kb on - strand, within Dshi_0587 at 578.884 kb on - strand at 579.090 kb on - strand, within Dshi_0588 at 579.109 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.232 kb on - strand, within Dshi_0588 at 579.235 kb on + strand, within Dshi_0588 at 579.322 kb on + strand, within Dshi_0588 at 579.418 kb on + strand, within Dshi_0588 at 579.426 kb on - strand, within Dshi_0588 at 579.427 kb on - strand, within Dshi_0588 at 579.488 kb on + strand at 579.488 kb on + strand at 579.488 kb on + strand at 579.522 kb on - strand at 579.633 kb on - strand, within Dshi_0589 at 579.645 kb on + strand, within Dshi_0589 at 579.655 kb on - strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.675 kb on + strand, within Dshi_0589 at 579.738 kb on + strand, within Dshi_0589 at 579.887 kb on - strand, within Dshi_0589 at 579.994 kb on + strand, within Dshi_0589 at 580.040 kb on + strand, within Dshi_0589 at 580.068 kb on + strand, within Dshi_0589 at 580.082 kb on - strand, within Dshi_0589 at 580.129 kb on - strand, within Dshi_0589 at 580.195 kb on - strand, within Dshi_0589 at 580.244 kb on - strand at 580.255 kb on - strand at 580.440 kb on + strand, within Dshi_0590 at 580.443 kb on - strand, within Dshi_0590
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 577,969 - Dshi_0586 0.49 -1.0 577,974 - Dshi_0586 0.50 -2.3 577,974 - Dshi_0586 0.50 -0.0 578,001 - Dshi_0586 0.52 -2.0 578,073 + Dshi_0586 0.59 -2.5 578,224 - Dshi_0586 0.74 -1.1 578,256 - Dshi_0586 0.77 -4.8 578,324 + Dshi_0586 0.83 -1.8 578,387 + Dshi_0586 0.89 -0.4 578,402 + -3.8 578,402 + -3.0 578,410 - -0.8 578,424 + +0.2 578,437 - -0.5 578,452 + -1.5 578,480 + -0.3 578,488 - -0.1 578,584 - Dshi_0587 0.33 -1.1 578,628 + Dshi_0587 0.46 +0.2 578,701 - Dshi_0587 0.67 +0.9 578,884 - -1.3 579,090 - Dshi_0588 0.33 +0.5 579,109 - Dshi_0588 0.36 +2.5 579,232 - Dshi_0588 0.56 +1.3 579,232 - Dshi_0588 0.56 +1.5 579,232 - Dshi_0588 0.56 +1.8 579,232 - Dshi_0588 0.56 -4.0 579,235 + Dshi_0588 0.56 +0.8 579,322 + Dshi_0588 0.71 +0.3 579,418 + Dshi_0588 0.86 -0.9 579,426 - Dshi_0588 0.88 +0.5 579,427 - Dshi_0588 0.88 -0.1 579,488 + +0.7 579,488 + +0.5 579,488 + +1.5 579,522 - +0.0 579,633 - Dshi_0589 0.17 +2.0 579,645 + Dshi_0589 0.19 +1.1 579,655 - Dshi_0589 0.20 -2.1 579,675 + Dshi_0589 0.23 -2.7 579,675 + Dshi_0589 0.23 -0.2 579,738 + Dshi_0589 0.31 +1.3 579,887 - Dshi_0589 0.50 +0.5 579,994 + Dshi_0589 0.63 -0.7 580,040 + Dshi_0589 0.69 -1.8 580,068 + Dshi_0589 0.73 +0.9 580,082 - Dshi_0589 0.74 -1.2 580,129 - Dshi_0589 0.80 -0.2 580,195 - Dshi_0589 0.89 -0.4 580,244 - +0.5 580,255 - +2.0 580,440 + Dshi_0590 0.13 -1.5 580,443 - Dshi_0590 0.14 -1.3
Or see this region's nucleotide sequence