Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0472

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0471 and Dshi_0472 are separated by 25 nucleotidesDshi_0472 and Dshi_0473 are separated by 167 nucleotides Dshi_0471: Dshi_0471 - beta-lactamase domain protein (RefSeq), at 456,517 to 457,557 _0471 Dshi_0472: Dshi_0472 - hypothetical protein (RefSeq), at 457,583 to 458,197 _0472 Dshi_0473: Dshi_0473 - Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase (RefSeq), at 458,365 to 459,477 _0473 Position (kb) 457 458 459Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 456.587 kb on + strandat 456.632 kb on - strand, within Dshi_0471at 456.653 kb on + strand, within Dshi_0471at 456.661 kb on - strand, within Dshi_0471at 456.672 kb on - strand, within Dshi_0471at 456.696 kb on + strand, within Dshi_0471at 456.731 kb on - strand, within Dshi_0471at 456.744 kb on + strand, within Dshi_0471at 456.893 kb on + strand, within Dshi_0471at 456.970 kb on + strand, within Dshi_0471at 456.981 kb on + strand, within Dshi_0471at 456.988 kb on + strand, within Dshi_0471at 457.004 kb on + strand, within Dshi_0471at 457.124 kb on + strand, within Dshi_0471at 457.132 kb on - strand, within Dshi_0471at 457.134 kb on + strand, within Dshi_0471at 457.142 kb on - strand, within Dshi_0471at 457.169 kb on + strand, within Dshi_0471at 457.173 kb on + strand, within Dshi_0471at 457.177 kb on - strand, within Dshi_0471at 457.248 kb on + strand, within Dshi_0471at 457.248 kb on + strand, within Dshi_0471at 457.263 kb on + strand, within Dshi_0471at 457.291 kb on + strand, within Dshi_0471at 457.325 kb on + strand, within Dshi_0471at 457.338 kb on - strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.351 kb on + strand, within Dshi_0471at 457.505 kb on + strandat 457.513 kb on - strandat 457.566 kb on - strandat 457.620 kb on + strandat 457.645 kb on + strand, within Dshi_0472at 457.647 kb on - strand, within Dshi_0472at 457.738 kb on + strand, within Dshi_0472at 457.746 kb on - strand, within Dshi_0472at 457.857 kb on - strand, within Dshi_0472at 457.866 kb on + strand, within Dshi_0472at 457.900 kb on + strand, within Dshi_0472at 457.928 kb on + strand, within Dshi_0472at 457.931 kb on - strand, within Dshi_0472at 457.987 kb on - strand, within Dshi_0472at 458.035 kb on + strand, within Dshi_0472at 458.035 kb on + strand, within Dshi_0472at 458.050 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.069 kb on + strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.077 kb on - strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.079 kb on + strand, within Dshi_0472at 458.087 kb on - strand, within Dshi_0472at 458.106 kb on + strand, within Dshi_0472at 458.122 kb on + strand, within Dshi_0472at 458.135 kb on - strand, within Dshi_0472at 458.154 kb on + strandat 458.162 kb on - strandat 458.175 kb on + strandat 458.180 kb on + strandat 458.187 kb on + strandat 458.187 kb on + strandat 458.188 kb on - strandat 458.188 kb on - strandat 458.195 kb on - strandat 458.195 kb on - strandat 458.204 kb on + strandat 458.212 kb on - strandat 458.214 kb on + strandat 458.217 kb on - strandat 458.217 kb on - strandat 458.217 kb on - strandat 458.224 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.239 kb on + strandat 458.247 kb on - strandat 458.247 kb on - strandat 458.258 kb on + strandat 458.278 kb on - strandat 458.283 kb on - strandat 458.283 kb on - strandat 458.287 kb on + strandat 458.301 kb on - strandat 458.310 kb on + strandat 458.312 kb on - strandat 458.312 kb on - strandat 458.314 kb on + strandat 458.331 kb on - strandat 458.338 kb on + strandat 458.346 kb on - strandat 458.353 kb on - strandat 458.387 kb on - strandat 458.435 kb on + strandat 458.435 kb on + strandat 458.443 kb on - strandat 458.464 kb on + strandat 458.489 kb on - strand, within Dshi_0473at 458.524 kb on - strand, within Dshi_0473at 458.539 kb on + strand, within Dshi_0473at 458.547 kb on - strand, within Dshi_0473at 458.594 kb on + strand, within Dshi_0473at 458.594 kb on + strand, within Dshi_0473at 458.594 kb on + strand, within Dshi_0473at 458.602 kb on - strand, within Dshi_0473at 458.696 kb on - strand, within Dshi_0473at 458.704 kb on + strand, within Dshi_0473at 458.712 kb on - strand, within Dshi_0473at 458.717 kb on - strand, within Dshi_0473at 458.769 kb on + strand, within Dshi_0473at 458.797 kb on - strand, within Dshi_0473at 458.798 kb on + strand, within Dshi_0473at 458.804 kb on - strand, within Dshi_0473at 458.832 kb on + strand, within Dshi_0473at 458.957 kb on + strand, within Dshi_0473at 458.964 kb on - strand, within Dshi_0473at 458.965 kb on - strand, within Dshi_0473at 459.021 kb on + strand, within Dshi_0473at 459.164 kb on + strand, within Dshi_0473at 459.164 kb on + strand, within Dshi_0473at 459.172 kb on - strand, within Dshi_0473at 459.172 kb on - strand, within Dshi_0473at 459.172 kb on - strand, within Dshi_0473at 459.194 kb on - strand, within Dshi_0473

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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456,587 + +0.0
456,632 - Dshi_0471 0.11 -0.1
456,653 + Dshi_0471 0.13 +0.8
456,661 - Dshi_0471 0.14 -0.6
456,672 - Dshi_0471 0.15 +1.3
456,696 + Dshi_0471 0.17 +4.6
456,731 - Dshi_0471 0.21 +0.3
456,744 + Dshi_0471 0.22 -0.0
456,893 + Dshi_0471 0.36 -0.4
456,970 + Dshi_0471 0.44 -0.4
456,981 + Dshi_0471 0.45 -3.1
456,988 + Dshi_0471 0.45 -1.6
457,004 + Dshi_0471 0.47 -0.1
457,124 + Dshi_0471 0.58 -1.9
457,132 - Dshi_0471 0.59 -2.7
457,134 + Dshi_0471 0.59 -0.1
457,142 - Dshi_0471 0.60 +0.1
457,169 + Dshi_0471 0.63 -0.9
457,173 + Dshi_0471 0.63 -1.1
457,177 - Dshi_0471 0.63 -1.8
457,248 + Dshi_0471 0.70 -0.3
457,248 + Dshi_0471 0.70 -0.5
457,263 + Dshi_0471 0.72 +0.5
457,291 + Dshi_0471 0.74 -1.5
457,325 + Dshi_0471 0.78 -5.0
457,338 - Dshi_0471 0.79 +0.7
457,351 + Dshi_0471 0.80 -0.1
457,351 + Dshi_0471 0.80 -3.4
457,351 + Dshi_0471 0.80 +1.0
457,505 + +0.7
457,513 - +1.0
457,566 - -0.2
457,620 + -1.9
457,645 + Dshi_0472 0.10 -0.2
457,647 - Dshi_0472 0.10 -1.6
457,738 + Dshi_0472 0.25 +0.0
457,746 - Dshi_0472 0.27 +0.2
457,857 - Dshi_0472 0.45 +0.2
457,866 + Dshi_0472 0.46 -1.8
457,900 + Dshi_0472 0.52 +0.2
457,928 + Dshi_0472 0.56 +2.7
457,931 - Dshi_0472 0.57 -3.7
457,987 - Dshi_0472 0.66 +4.2
458,035 + Dshi_0472 0.73 -0.6
458,035 + Dshi_0472 0.73 +2.9
458,050 + Dshi_0472 0.76 +0.6
458,069 + Dshi_0472 0.79 -1.0
458,069 + Dshi_0472 0.79 -4.4
458,069 + Dshi_0472 0.79 +0.4
458,077 - Dshi_0472 0.80 -0.4
458,077 - Dshi_0472 0.80 +1.5
458,077 - Dshi_0472 0.80 +1.5
458,079 + Dshi_0472 0.81 -1.0
458,079 + Dshi_0472 0.81 +0.4
458,079 + Dshi_0472 0.81 -3.3
458,079 + Dshi_0472 0.81 +1.3
458,087 - Dshi_0472 0.82 -4.6
458,106 + Dshi_0472 0.85 -0.1
458,122 + Dshi_0472 0.88 +1.5
458,135 - Dshi_0472 0.90 +0.0
458,154 + -2.6
458,162 - -1.5
458,175 + +0.6
458,180 + -0.8
458,187 + +0.5
458,187 + +1.3
458,188 - +0.0
458,188 - -1.1
458,195 - -1.5
458,195 - -0.4
458,204 + -2.9
458,212 - +0.4
458,214 + +1.5
458,217 - -1.4
458,217 - +0.5
458,217 - -0.4
458,224 + -0.7
458,239 + +0.3
458,239 + -2.8
458,239 + -1.6
458,239 + +0.1
458,247 - -0.2
458,247 - -1.0
458,258 + -1.7
458,278 - +0.5
458,283 - +0.3
458,283 - -0.4
458,287 + -0.9
458,301 - +0.0
458,310 + +2.5
458,312 - +0.5
458,312 - +0.1
458,314 + -0.3
458,331 - -0.7
458,338 + +0.8
458,346 - +0.7
458,353 - +1.5
458,387 - -1.1
458,435 + +1.7
458,435 + +0.5
458,443 - -1.1
458,464 + +3.4
458,489 - Dshi_0473 0.11 -0.2
458,524 - Dshi_0473 0.14 -2.3
458,539 + Dshi_0473 0.16 +0.1
458,547 - Dshi_0473 0.16 +1.3
458,594 + Dshi_0473 0.21 +0.0
458,594 + Dshi_0473 0.21 -1.5
458,594 + Dshi_0473 0.21 -1.4
458,602 - Dshi_0473 0.21 -0.0
458,696 - Dshi_0473 0.30 +1.0
458,704 + Dshi_0473 0.30 -0.5
458,712 - Dshi_0473 0.31 -0.1
458,717 - Dshi_0473 0.32 +0.7
458,769 + Dshi_0473 0.36 -0.2
458,797 - Dshi_0473 0.39 -0.6
458,798 + Dshi_0473 0.39 -0.3
458,804 - Dshi_0473 0.39 +2.1
458,832 + Dshi_0473 0.42 +0.5
458,957 + Dshi_0473 0.53 -0.7
458,964 - Dshi_0473 0.54 -0.1
458,965 - Dshi_0473 0.54 +1.9
459,021 + Dshi_0473 0.59 +0.1
459,164 + Dshi_0473 0.72 -0.6
459,164 + Dshi_0473 0.72 +1.5
459,172 - Dshi_0473 0.73 -0.5
459,172 - Dshi_0473 0.73 -0.5
459,172 - Dshi_0473 0.73 +1.1
459,194 - Dshi_0473 0.74 +0.2

Or see this region's nucleotide sequence