Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0153

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0151 and Dshi_0152 overlap by 4 nucleotidesDshi_0152 and Dshi_0153 are separated by 80 nucleotidesDshi_0153 and Dshi_0154 are separated by 181 nucleotides Dshi_0151: Dshi_0151 - protein of unknown function DUF6 transmembrane (RefSeq), at 151,387 to 152,265 _0151 Dshi_0152: Dshi_0152 - protein of unknown function DUF752 (RefSeq), at 152,262 to 152,954 _0152 Dshi_0153: Dshi_0153 - FAD dependent oxidoreductase (RefSeq), at 153,035 to 154,093 _0153 Dshi_0154: Dshi_0154 - NADPH-dependent FMN reductase (RefSeq), at 154,275 to 154,820 _0154 Position (kb) 153 154 155Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 152.189 kb on + strandat 152.263 kb on + strandat 152.328 kb on - strandat 152.455 kb on + strand, within Dshi_0152at 152.749 kb on + strand, within Dshi_0152at 152.782 kb on + strand, within Dshi_0152at 152.786 kb on - strand, within Dshi_0152at 152.801 kb on + strand, within Dshi_0152at 152.902 kb on - strandat 152.907 kb on - strandat 152.921 kb on + strandat 152.958 kb on + strandat 152.966 kb on - strandat 152.973 kb on + strandat 153.097 kb on - strandat 153.108 kb on + strandat 153.118 kb on + strandat 153.126 kb on - strandat 153.143 kb on - strand, within Dshi_0153at 153.145 kb on - strand, within Dshi_0153at 153.287 kb on + strand, within Dshi_0153at 153.301 kb on - strand, within Dshi_0153at 153.378 kb on + strand, within Dshi_0153at 153.414 kb on - strand, within Dshi_0153at 153.448 kb on - strand, within Dshi_0153at 153.529 kb on + strand, within Dshi_0153at 153.547 kb on - strand, within Dshi_0153at 153.569 kb on - strand, within Dshi_0153at 153.634 kb on - strand, within Dshi_0153at 153.738 kb on - strand, within Dshi_0153at 153.775 kb on + strand, within Dshi_0153at 153.780 kb on + strand, within Dshi_0153at 153.780 kb on + strand, within Dshi_0153at 154.024 kb on - strandat 154.054 kb on - strandat 154.179 kb on + strandat 154.201 kb on + strandat 154.201 kb on + strandat 154.209 kb on - strandat 154.226 kb on + strandat 154.553 kb on - strand, within Dshi_0154at 154.760 kb on - strand, within Dshi_0154at 154.797 kb on + strandat 154.805 kb on + strandat 154.814 kb on + strandat 154.848 kb on - strandat 154.853 kb on - strandat 154.854 kb on + strandat 154.953 kb on - strandat 155.014 kb on + strandat 155.032 kb on - strandat 155.065 kb on + strandat 155.073 kb on - strandat 155.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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152,189 + +2.5
152,263 + +0.1
152,328 - +0.1
152,455 + Dshi_0152 0.28 -1.1
152,749 + Dshi_0152 0.70 -1.4
152,782 + Dshi_0152 0.75 +0.9
152,786 - Dshi_0152 0.76 +0.9
152,801 + Dshi_0152 0.78 -2.9
152,902 - -0.1
152,907 - -1.3
152,921 + +3.9
152,958 + -1.9
152,966 - -0.7
152,973 + -1.7
153,097 - -1.4
153,108 + +3.2
153,118 + +0.9
153,126 - -0.7
153,143 - Dshi_0153 0.10 -0.1
153,145 - Dshi_0153 0.10 +3.2
153,287 + Dshi_0153 0.24 -2.6
153,301 - Dshi_0153 0.25 +2.5
153,378 + Dshi_0153 0.32 -1.1
153,414 - Dshi_0153 0.36 +0.9
153,448 - Dshi_0153 0.39 +2.9
153,529 + Dshi_0153 0.47 -0.1
153,547 - Dshi_0153 0.48 -0.4
153,569 - Dshi_0153 0.50 -1.1
153,634 - Dshi_0153 0.57 +0.4
153,738 - Dshi_0153 0.66 +0.9
153,775 + Dshi_0153 0.70 +0.9
153,780 + Dshi_0153 0.70 +1.9
153,780 + Dshi_0153 0.70 +0.9
154,024 - -1.4
154,054 - +0.9
154,179 + -1.1
154,201 + -1.1
154,201 + +0.9
154,209 - +0.9
154,226 + -0.2
154,553 - Dshi_0154 0.51 +0.9
154,760 - Dshi_0154 0.89 -1.3
154,797 + -0.7
154,805 + +0.9
154,814 + -2.5
154,848 - -1.3
154,853 - +0.9
154,854 + +0.9
154,953 - +0.3
155,014 + +2.5
155,032 - +3.9
155,065 + -2.3
155,073 - +0.9
155,073 - -0.1

Or see this region's nucleotide sequence