Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0113

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0112 and Dshi_0113 are separated by 55 nucleotidesDshi_0113 and Dshi_0114 are separated by 86 nucleotides Dshi_0112: Dshi_0112 - AFG1-family ATPase (RefSeq), at 110,834 to 112,003 _0112 Dshi_0113: Dshi_0113 - Redoxin domain protein (RefSeq), at 112,059 to 112,541 _0113 Dshi_0114: Dshi_0114 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase (RefSeq), at 112,628 to 113,833 _0114 Position (kb) 112 113Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 111.120 kb on + strand, within Dshi_0112at 111.166 kb on + strand, within Dshi_0112at 111.395 kb on - strand, within Dshi_0112at 111.459 kb on + strand, within Dshi_0112at 111.525 kb on + strand, within Dshi_0112at 111.613 kb on - strand, within Dshi_0112at 111.614 kb on + strand, within Dshi_0112at 111.745 kb on + strand, within Dshi_0112at 111.750 kb on + strand, within Dshi_0112at 111.760 kb on + strand, within Dshi_0112at 111.837 kb on + strand, within Dshi_0112at 112.006 kb on - strandat 112.025 kb on + strandat 112.186 kb on - strand, within Dshi_0113at 112.288 kb on + strand, within Dshi_0113at 112.513 kb on + strandat 112.586 kb on + strandat 112.587 kb on - strandat 112.594 kb on - strandat 112.604 kb on - strandat 112.630 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
remove
111,120 + Dshi_0112 0.24 -2.9
111,166 + Dshi_0112 0.28 +1.6
111,395 - Dshi_0112 0.48 +1.0
111,459 + Dshi_0112 0.53 -1.1
111,525 + Dshi_0112 0.59 +1.9
111,613 - Dshi_0112 0.67 +2.3
111,614 + Dshi_0112 0.67 -3.4
111,745 + Dshi_0112 0.78 -3.9
111,750 + Dshi_0112 0.78 +2.0
111,760 + Dshi_0112 0.79 +3.2
111,837 + Dshi_0112 0.86 +0.9
112,006 - +0.5
112,025 + -3.4
112,186 - Dshi_0113 0.26 -0.9
112,288 + Dshi_0113 0.47 -1.7
112,513 + -3.1
112,586 + -1.4
112,587 - -3.0
112,594 - -1.1
112,604 - +0.0
112,630 + -2.0

Or see this region's nucleotide sequence