Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0107

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0105 and Dshi_0106 overlap by 4 nucleotidesDshi_0106 and Dshi_0107 are separated by 119 nucleotidesDshi_0107 and Dshi_0108 are separated by 7 nucleotides Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249 _0105 Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869 _0106 Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960 _0107 Dshi_0108: Dshi_0108 - hypothetical protein (RefSeq), at 106,968 to 107,909 _0108 Position (kb) 105 106 107Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.007 kb on - strand, within Dshi_0105at 105.114 kb on + strand, within Dshi_0105at 105.152 kb on + strand, within Dshi_0105at 105.160 kb on - strand, within Dshi_0105at 105.160 kb on - strand, within Dshi_0105at 105.197 kb on - strandat 105.256 kb on - strandat 105.256 kb on - strandat 105.348 kb on - strand, within Dshi_0106at 105.350 kb on - strand, within Dshi_0106at 105.357 kb on + strand, within Dshi_0106at 105.360 kb on - strand, within Dshi_0106at 105.380 kb on - strand, within Dshi_0106at 105.432 kb on + strand, within Dshi_0106at 105.432 kb on + strand, within Dshi_0106at 105.507 kb on - strand, within Dshi_0106at 105.546 kb on + strand, within Dshi_0106at 105.670 kb on + strand, within Dshi_0106at 105.787 kb on - strand, within Dshi_0106at 105.879 kb on + strandat 105.884 kb on + strandat 105.889 kb on + strandat 105.927 kb on - strandat 106.083 kb on - strandat 106.220 kb on + strand, within Dshi_0107at 106.374 kb on + strand, within Dshi_0107at 106.401 kb on + strand, within Dshi_0107at 106.475 kb on - strand, within Dshi_0107at 106.498 kb on + strand, within Dshi_0107at 106.508 kb on + strand, within Dshi_0107at 106.523 kb on - strand, within Dshi_0107at 106.533 kb on - strand, within Dshi_0107at 106.564 kb on - strand, within Dshi_0107at 106.656 kb on + strand, within Dshi_0107at 106.666 kb on + strand, within Dshi_0107at 106.758 kb on + strand, within Dshi_0107at 106.758 kb on + strand, within Dshi_0107at 106.763 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.774 kb on + strand, within Dshi_0107at 106.782 kb on - strand, within Dshi_0107at 106.895 kb on + strandat 106.895 kb on + strandat 106.903 kb on - strandat 106.914 kb on + strandat 106.919 kb on + strandat 107.099 kb on + strand, within Dshi_0108at 107.107 kb on - strand, within Dshi_0108at 107.152 kb on - strand, within Dshi_0108at 107.152 kb on - strand, within Dshi_0108at 107.221 kb on - strand, within Dshi_0108at 107.255 kb on - strand, within Dshi_0108at 107.303 kb on + strand, within Dshi_0108at 107.322 kb on - strand, within Dshi_0108at 107.337 kb on + strand, within Dshi_0108at 107.404 kb on + strand, within Dshi_0108at 107.432 kb on - strand, within Dshi_0108at 107.435 kb on + strand, within Dshi_0108at 107.468 kb on + strand, within Dshi_0108at 107.483 kb on - strand, within Dshi_0108at 107.484 kb on + strand, within Dshi_0108at 107.492 kb on - strand, within Dshi_0108at 107.618 kb on + strand, within Dshi_0108at 107.618 kb on + strand, within Dshi_0108at 107.709 kb on - strand, within Dshi_0108at 107.709 kb on - strand, within Dshi_0108at 107.739 kb on - strand, within Dshi_0108at 107.810 kb on + strand, within Dshi_0108at 107.872 kb on - strandat 107.874 kb on + strandat 107.891 kb on - strandat 107.932 kb on - strandat 107.934 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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105,007 - Dshi_0105 0.66 +2.3
105,007 - Dshi_0105 0.66 -1.4
105,007 - Dshi_0105 0.66 +1.0
105,114 + Dshi_0105 0.81 -0.3
105,152 + Dshi_0105 0.86 +0.6
105,160 - Dshi_0105 0.87 +1.4
105,160 - Dshi_0105 0.87 -0.4
105,197 - +0.6
105,256 - +2.5
105,256 - +4.0
105,348 - Dshi_0106 0.16 +0.6
105,350 - Dshi_0106 0.17 -1.7
105,357 + Dshi_0106 0.18 -0.7
105,360 - Dshi_0106 0.18 -0.0
105,380 - Dshi_0106 0.21 -0.0
105,432 + Dshi_0106 0.30 -0.6
105,432 + Dshi_0106 0.30 +0.8
105,507 - Dshi_0106 0.42 +0.4
105,546 + Dshi_0106 0.48 +2.2
105,670 + Dshi_0106 0.68 -0.6
105,787 - Dshi_0106 0.87 +2.3
105,879 + -0.7
105,884 + -0.2
105,889 + +0.5
105,927 - +0.4
106,083 - -0.6
106,220 + Dshi_0107 0.24 -4.5
106,374 + Dshi_0107 0.40 -0.9
106,401 + Dshi_0107 0.42 -0.9
106,475 - Dshi_0107 0.50 -3.7
106,498 + Dshi_0107 0.52 -1.4
106,508 + Dshi_0107 0.53 +2.5
106,523 - Dshi_0107 0.55 -0.8
106,533 - Dshi_0107 0.56 -3.6
106,564 - Dshi_0107 0.59 -2.1
106,656 + Dshi_0107 0.69 +1.1
106,666 + Dshi_0107 0.70 -1.8
106,758 + Dshi_0107 0.79 -1.4
106,758 + Dshi_0107 0.79 -1.2
106,763 + Dshi_0107 0.80 -3.4
106,774 + Dshi_0107 0.81 -2.1
106,774 + Dshi_0107 0.81 -0.8
106,774 + Dshi_0107 0.81 -2.1
106,782 - Dshi_0107 0.82 -0.8
106,895 + -1.3
106,895 + -2.0
106,903 - -1.2
106,914 + -0.3
106,919 + -2.3
107,099 + Dshi_0108 0.14 +1.0
107,107 - Dshi_0108 0.15 +3.4
107,152 - Dshi_0108 0.20 -0.9
107,152 - Dshi_0108 0.20 -0.5
107,221 - Dshi_0108 0.27 -2.4
107,255 - Dshi_0108 0.30 +2.3
107,303 + Dshi_0108 0.36 -0.8
107,322 - Dshi_0108 0.38 -1.1
107,337 + Dshi_0108 0.39 -1.4
107,404 + Dshi_0108 0.46 -0.9
107,432 - Dshi_0108 0.49 +1.6
107,435 + Dshi_0108 0.50 -0.1
107,468 + Dshi_0108 0.53 +0.9
107,483 - Dshi_0108 0.55 +3.5
107,484 + Dshi_0108 0.55 +1.9
107,492 - Dshi_0108 0.56 -1.6
107,618 + Dshi_0108 0.69 +0.9
107,618 + Dshi_0108 0.69 +2.8
107,709 - Dshi_0108 0.79 +0.4
107,709 - Dshi_0108 0.79 +0.9
107,739 - Dshi_0108 0.82 +2.2
107,810 + Dshi_0108 0.89 +0.0
107,872 - +1.1
107,874 + -2.3
107,891 - -0.4
107,932 - -0.5
107,934 + -0.9

Or see this region's nucleotide sequence