Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0105 and Dshi_0106 overlap by 4 nucleotides Dshi_0106 and Dshi_0107 are separated by 119 nucleotides Dshi_0107 and Dshi_0108 are separated by 7 nucleotides
Dshi_0105: Dshi_0105 - protein of unknown function DUF88 (RefSeq), at 104,539 to 105,249
_0105
Dshi_0106: Dshi_0106 - transcriptional regulator, TetR family (RefSeq), at 105,246 to 105,869
_0106
Dshi_0107: Dshi_0107 - Rubrerythrin (RefSeq), at 105,989 to 106,960
_0107
Dshi_0108: Dshi_0108 - hypothetical protein (RefSeq), at 106,968 to 107,909
_0108
Position (kb)
105
106
107 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.007 kb on - strand, within Dshi_0105 at 105.114 kb on + strand, within Dshi_0105 at 105.152 kb on + strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.160 kb on - strand, within Dshi_0105 at 105.197 kb on - strand at 105.256 kb on - strand at 105.256 kb on - strand at 105.348 kb on - strand, within Dshi_0106 at 105.350 kb on - strand, within Dshi_0106 at 105.357 kb on + strand, within Dshi_0106 at 105.360 kb on - strand, within Dshi_0106 at 105.380 kb on - strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.432 kb on + strand, within Dshi_0106 at 105.507 kb on - strand, within Dshi_0106 at 105.546 kb on + strand, within Dshi_0106 at 105.670 kb on + strand, within Dshi_0106 at 105.787 kb on - strand, within Dshi_0106 at 105.879 kb on + strand at 105.884 kb on + strand at 105.889 kb on + strand at 105.927 kb on - strand at 106.083 kb on - strand at 106.220 kb on + strand, within Dshi_0107 at 106.374 kb on + strand, within Dshi_0107 at 106.401 kb on + strand, within Dshi_0107 at 106.475 kb on - strand, within Dshi_0107 at 106.498 kb on + strand, within Dshi_0107 at 106.508 kb on + strand, within Dshi_0107 at 106.523 kb on - strand, within Dshi_0107 at 106.533 kb on - strand, within Dshi_0107 at 106.564 kb on - strand, within Dshi_0107 at 106.656 kb on + strand, within Dshi_0107 at 106.666 kb on + strand, within Dshi_0107 at 106.758 kb on + strand, within Dshi_0107 at 106.758 kb on + strand, within Dshi_0107 at 106.763 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.774 kb on + strand, within Dshi_0107 at 106.782 kb on - strand, within Dshi_0107 at 106.895 kb on + strand at 106.895 kb on + strand at 106.903 kb on - strand at 106.914 kb on + strand at 106.919 kb on + strand at 107.099 kb on + strand, within Dshi_0108 at 107.107 kb on - strand, within Dshi_0108 at 107.152 kb on - strand, within Dshi_0108 at 107.152 kb on - strand, within Dshi_0108 at 107.221 kb on - strand, within Dshi_0108 at 107.255 kb on - strand, within Dshi_0108 at 107.303 kb on + strand, within Dshi_0108 at 107.322 kb on - strand, within Dshi_0108 at 107.337 kb on + strand, within Dshi_0108 at 107.404 kb on + strand, within Dshi_0108 at 107.432 kb on - strand, within Dshi_0108 at 107.435 kb on + strand, within Dshi_0108 at 107.468 kb on + strand, within Dshi_0108 at 107.483 kb on - strand, within Dshi_0108 at 107.484 kb on + strand, within Dshi_0108 at 107.492 kb on - strand, within Dshi_0108 at 107.618 kb on + strand, within Dshi_0108 at 107.618 kb on + strand, within Dshi_0108 at 107.709 kb on - strand, within Dshi_0108 at 107.709 kb on - strand, within Dshi_0108 at 107.739 kb on - strand, within Dshi_0108 at 107.810 kb on + strand, within Dshi_0108 at 107.872 kb on - strand at 107.874 kb on + strand at 107.891 kb on - strand at 107.932 kb on - strand at 107.934 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 105,007 - Dshi_0105 0.66 +2.3 105,007 - Dshi_0105 0.66 -1.4 105,007 - Dshi_0105 0.66 +1.0 105,114 + Dshi_0105 0.81 -0.3 105,152 + Dshi_0105 0.86 +0.6 105,160 - Dshi_0105 0.87 +1.4 105,160 - Dshi_0105 0.87 -0.4 105,197 - +0.6 105,256 - +2.5 105,256 - +4.0 105,348 - Dshi_0106 0.16 +0.6 105,350 - Dshi_0106 0.17 -1.7 105,357 + Dshi_0106 0.18 -0.7 105,360 - Dshi_0106 0.18 -0.0 105,380 - Dshi_0106 0.21 -0.0 105,432 + Dshi_0106 0.30 -0.6 105,432 + Dshi_0106 0.30 +0.8 105,507 - Dshi_0106 0.42 +0.4 105,546 + Dshi_0106 0.48 +2.2 105,670 + Dshi_0106 0.68 -0.6 105,787 - Dshi_0106 0.87 +2.3 105,879 + -0.7 105,884 + -0.2 105,889 + +0.5 105,927 - +0.4 106,083 - -0.6 106,220 + Dshi_0107 0.24 -4.5 106,374 + Dshi_0107 0.40 -0.9 106,401 + Dshi_0107 0.42 -0.9 106,475 - Dshi_0107 0.50 -3.7 106,498 + Dshi_0107 0.52 -1.4 106,508 + Dshi_0107 0.53 +2.5 106,523 - Dshi_0107 0.55 -0.8 106,533 - Dshi_0107 0.56 -3.6 106,564 - Dshi_0107 0.59 -2.1 106,656 + Dshi_0107 0.69 +1.1 106,666 + Dshi_0107 0.70 -1.8 106,758 + Dshi_0107 0.79 -1.4 106,758 + Dshi_0107 0.79 -1.2 106,763 + Dshi_0107 0.80 -3.4 106,774 + Dshi_0107 0.81 -2.1 106,774 + Dshi_0107 0.81 -0.8 106,774 + Dshi_0107 0.81 -2.1 106,782 - Dshi_0107 0.82 -0.8 106,895 + -1.3 106,895 + -2.0 106,903 - -1.2 106,914 + -0.3 106,919 + -2.3 107,099 + Dshi_0108 0.14 +1.0 107,107 - Dshi_0108 0.15 +3.4 107,152 - Dshi_0108 0.20 -0.9 107,152 - Dshi_0108 0.20 -0.5 107,221 - Dshi_0108 0.27 -2.4 107,255 - Dshi_0108 0.30 +2.3 107,303 + Dshi_0108 0.36 -0.8 107,322 - Dshi_0108 0.38 -1.1 107,337 + Dshi_0108 0.39 -1.4 107,404 + Dshi_0108 0.46 -0.9 107,432 - Dshi_0108 0.49 +1.6 107,435 + Dshi_0108 0.50 -0.1 107,468 + Dshi_0108 0.53 +0.9 107,483 - Dshi_0108 0.55 +3.5 107,484 + Dshi_0108 0.55 +1.9 107,492 - Dshi_0108 0.56 -1.6 107,618 + Dshi_0108 0.69 +0.9 107,618 + Dshi_0108 0.69 +2.8 107,709 - Dshi_0108 0.79 +0.4 107,709 - Dshi_0108 0.79 +0.9 107,739 - Dshi_0108 0.82 +2.2 107,810 + Dshi_0108 0.89 +0.0 107,872 - +1.1 107,874 + -2.3 107,891 - -0.4 107,932 - -0.5 107,934 + -0.9
Or see this region's nucleotide sequence