Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0061

Experiment: m.b. Thallium(I) acetate 0.001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0060 and Dshi_0061 are separated by 123 nucleotidesDshi_0061 and Dshi_0062 are separated by 61 nucleotides Dshi_0060: Dshi_0060 - aminotransferase class I and II (RefSeq), at 59,687 to 60,868 _0060 Dshi_0061: Dshi_0061 - Amidase (RefSeq), at 60,992 to 62,323 _0061 Dshi_0062: Dshi_0062 - Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family (RefSeq), at 62,385 to 63,650 _0062 Position (kb) 60 61 62 63Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 60.998 kb on - strandat 60.998 kb on - strandat 61.069 kb on + strandat 61.086 kb on + strandat 61.092 kb on + strandat 61.094 kb on - strandat 61.276 kb on + strand, within Dshi_0061at 61.285 kb on + strand, within Dshi_0061at 61.293 kb on - strand, within Dshi_0061at 61.453 kb on + strand, within Dshi_0061at 61.488 kb on + strand, within Dshi_0061at 61.652 kb on + strand, within Dshi_0061at 61.654 kb on + strand, within Dshi_0061at 61.748 kb on - strand, within Dshi_0061at 61.775 kb on - strand, within Dshi_0061at 61.822 kb on + strand, within Dshi_0061at 61.860 kb on + strand, within Dshi_0061at 61.920 kb on - strand, within Dshi_0061at 62.077 kb on + strand, within Dshi_0061at 62.164 kb on + strand, within Dshi_0061at 62.254 kb on + strandat 62.292 kb on + strandat 62.395 kb on + strandat 62.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml
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60,998 - -0.5
60,998 - +0.9
61,069 + +1.9
61,086 + -1.3
61,092 + -2.9
61,094 - +3.7
61,276 + Dshi_0061 0.21 -0.6
61,285 + Dshi_0061 0.22 -1.6
61,293 - Dshi_0061 0.23 -1.9
61,453 + Dshi_0061 0.35 +3.2
61,488 + Dshi_0061 0.37 -1.1
61,652 + Dshi_0061 0.50 +0.6
61,654 + Dshi_0061 0.50 -0.7
61,748 - Dshi_0061 0.57 -0.1
61,775 - Dshi_0061 0.59 -0.1
61,822 + Dshi_0061 0.62 +0.1
61,860 + Dshi_0061 0.65 +1.4
61,920 - Dshi_0061 0.70 -1.7
62,077 + Dshi_0061 0.81 +0.9
62,164 + Dshi_0061 0.88 +0.9
62,254 + -0.7
62,292 + -1.9
62,395 + +0.9
62,419 - -2.1

Or see this region's nucleotide sequence