Experiment: m.b. Thallium(I) acetate 0.001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0039 and Dshi_0040 are separated by 27 nucleotides Dshi_0040 and Dshi_0041 are separated by 6 nucleotides Dshi_0041 and Dshi_0042 overlap by 4 nucleotides Dshi_0042 and Dshi_0043 are separated by 86 nucleotides
Dshi_0039: Dshi_0039 - GTP cyclohydrolase II (RefSeq), at 41,277 to 42,347
_0039
Dshi_0040: Dshi_0040 - protein of unknown function DUF1330 (RefSeq), at 42,375 to 42,662
_0040
Dshi_0041: Dshi_0041 - hypothetical protein (RefSeq), at 42,669 to 43,163
_0041
Dshi_0042: Dshi_0042 - alanine racemase domain protein (RefSeq), at 43,160 to 43,816
_0042
Dshi_0043: Dshi_0043 - hypothetical protein (RefSeq), at 43,903 to 44,862
_0043
Position (kb) 42
43
44 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 42.593 kb on + strand, within Dshi_0040 at 42.644 kb on - strand at 42.697 kb on + strand at 42.718 kb on + strand at 42.731 kb on - strand, within Dshi_0041 at 42.736 kb on - strand, within Dshi_0041 at 42.779 kb on - strand, within Dshi_0041 at 42.903 kb on + strand, within Dshi_0041 at 42.916 kb on + strand, within Dshi_0041 at 43.007 kb on - strand, within Dshi_0041 at 43.107 kb on + strand, within Dshi_0041 at 43.168 kb on + strand at 43.333 kb on + strand, within Dshi_0042 at 43.366 kb on + strand, within Dshi_0042 at 43.470 kb on - strand, within Dshi_0042 at 43.501 kb on + strand, within Dshi_0042 at 43.698 kb on + strand, within Dshi_0042 at 43.782 kb on + strand at 43.782 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Thallium(I) acetate 0.001 mg/ml remove 42,593 + Dshi_0040 0.76 +1.9 42,644 - -1.1 42,697 + -1.1 42,718 + +0.9 42,731 - Dshi_0041 0.13 +0.9 42,736 - Dshi_0041 0.14 -3.6 42,779 - Dshi_0041 0.22 +3.2 42,903 + Dshi_0041 0.47 -1.8 42,916 + Dshi_0041 0.50 +2.2 43,007 - Dshi_0041 0.68 -0.1 43,107 + Dshi_0041 0.88 +1.3 43,168 + +1.5 43,333 + Dshi_0042 0.26 +0.9 43,366 + Dshi_0042 0.31 -2.7 43,470 - Dshi_0042 0.47 -0.1 43,501 + Dshi_0042 0.52 +0.3 43,698 + Dshi_0042 0.82 +0.9 43,782 + -1.1 43,782 + +3.7
Or see this region's nucleotide sequence