Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_848 and HP15_849 are separated by 125 nucleotides HP15_849 and HP15_850 are separated by 114 nucleotides
HP15_848: HP15_848 - protein containing DUF980, at 866,589 to 867,419
_848
HP15_849: HP15_849 - oxidoreductase, short chain dehydrogenase/reductase family protein, at 867,545 to 868,237
_849
HP15_850: HP15_850 - GGDEF domain protein, at 868,352 to 869,392
_850
Position (kb) 867
868
869 Strain fitness (log2 ratio) -1
0
1
2 at 866.558 kb on - strand at 866.633 kb on - strand at 866.641 kb on + strand at 866.744 kb on + strand, within HP15_848 at 866.820 kb on + strand, within HP15_848 at 866.839 kb on - strand, within HP15_848 at 866.875 kb on - strand, within HP15_848 at 866.901 kb on - strand, within HP15_848 at 866.963 kb on + strand, within HP15_848 at 866.966 kb on - strand, within HP15_848 at 866.987 kb on - strand, within HP15_848 at 867.051 kb on + strand, within HP15_848 at 867.232 kb on - strand, within HP15_848 at 867.484 kb on + strand at 867.614 kb on + strand at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.631 kb on + strand, within HP15_849 at 867.639 kb on - strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.720 kb on + strand, within HP15_849 at 867.722 kb on + strand, within HP15_849 at 867.762 kb on - strand, within HP15_849 at 867.780 kb on + strand, within HP15_849 at 867.882 kb on - strand, within HP15_849 at 868.073 kb on - strand, within HP15_849 at 868.285 kb on + strand at 868.365 kb on - strand at 868.382 kb on + strand at 868.436 kb on - strand at 868.562 kb on + strand, within HP15_850 at 868.570 kb on - strand, within HP15_850 at 868.702 kb on - strand, within HP15_850 at 868.720 kb on - strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.784 kb on + strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.792 kb on - strand, within HP15_850 at 868.794 kb on - strand, within HP15_850 at 869.077 kb on - strand, within HP15_850 at 869.102 kb on + strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.110 kb on - strand, within HP15_850 at 869.124 kb on - strand, within HP15_850 at 869.135 kb on - strand, within HP15_850 at 869.191 kb on - strand, within HP15_850
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 866,558 - -0.6 866,633 - +0.3 866,641 + +1.5 866,744 + HP15_848 0.19 -1.0 866,820 + HP15_848 0.28 -0.1 866,839 - HP15_848 0.30 -0.6 866,875 - HP15_848 0.34 +0.9 866,901 - HP15_848 0.38 +1.2 866,963 + HP15_848 0.45 +1.5 866,966 - HP15_848 0.45 -0.7 866,987 - HP15_848 0.48 +0.4 867,051 + HP15_848 0.56 -0.1 867,232 - HP15_848 0.77 -0.3 867,484 + +0.7 867,614 + -0.1 867,631 + HP15_849 0.12 -0.3 867,631 + HP15_849 0.12 +0.9 867,631 + HP15_849 0.12 -0.6 867,631 + HP15_849 0.12 -1.7 867,639 - HP15_849 0.14 +0.4 867,720 + HP15_849 0.25 -1.6 867,720 + HP15_849 0.25 -0.0 867,722 + HP15_849 0.26 -0.3 867,762 - HP15_849 0.31 -1.2 867,780 + HP15_849 0.34 -1.2 867,882 - HP15_849 0.49 +0.2 868,073 - HP15_849 0.76 -0.2 868,285 + +0.6 868,365 - +1.9 868,382 + -0.0 868,436 - +0.6 868,562 + HP15_850 0.20 +0.3 868,570 - HP15_850 0.21 -0.3 868,702 - HP15_850 0.34 -0.3 868,720 - HP15_850 0.35 -0.3 868,784 + HP15_850 0.41 +0.6 868,784 + HP15_850 0.41 +0.7 868,784 + HP15_850 0.41 -0.0 868,792 - HP15_850 0.42 -1.0 868,792 - HP15_850 0.42 +0.4 868,792 - HP15_850 0.42 +0.1 868,792 - HP15_850 0.42 +0.7 868,792 - HP15_850 0.42 +0.4 868,794 - HP15_850 0.42 +0.1 869,077 - HP15_850 0.70 -0.3 869,102 + HP15_850 0.72 -1.6 869,110 - HP15_850 0.73 -0.1 869,110 - HP15_850 0.73 +0.7 869,124 - HP15_850 0.74 +0.2 869,135 - HP15_850 0.75 -0.3 869,191 - HP15_850 0.81 -0.2
Or see this region's nucleotide sequence