Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_478 and HP15_479 are separated by 136 nucleotides HP15_479 and HP15_480 overlap by 8 nucleotides HP15_480 and HP15_481 are separated by 55 nucleotides
HP15_478: HP15_478 - type 4 fimbrial biogenesis protein PilQ, at 488,202 to 490,268
_478
HP15_479: HP15_479 - shikimate kinase I, at 490,405 to 490,971
_479
HP15_480: HP15_480 - 3-dehydroquinate synthase, at 490,964 to 492,058
_480
HP15_481: HP15_481 - sporulation domain protein, at 492,114 to 493,601
_481
Position (kb) 490
491
492
493 Strain fitness (log2 ratio) -2
-1
0
1 at 490.206 kb on - strand at 490.270 kb on - strand at 490.384 kb on + strand at 492.064 kb on + strand at 492.150 kb on + strand at 492.171 kb on - strand at 492.296 kb on - strand, within HP15_481 at 492.390 kb on + strand, within HP15_481 at 492.416 kb on - strand, within HP15_481 at 492.504 kb on - strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.577 kb on + strand, within HP15_481 at 492.585 kb on - strand, within HP15_481 at 492.585 kb on - strand, within HP15_481 at 492.666 kb on + strand, within HP15_481 at 492.688 kb on - strand, within HP15_481 at 492.783 kb on + strand, within HP15_481 at 492.827 kb on + strand, within HP15_481 at 492.842 kb on + strand, within HP15_481 at 492.884 kb on - strand, within HP15_481
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 490,206 - -1.3 490,270 - -0.5 490,384 + +0.8 492,064 + -0.4 492,150 + -1.1 492,171 - -2.3 492,296 - HP15_481 0.12 -1.0 492,390 + HP15_481 0.19 -0.5 492,416 - HP15_481 0.20 -1.3 492,504 - HP15_481 0.26 -1.0 492,577 + HP15_481 0.31 +0.2 492,577 + HP15_481 0.31 -0.7 492,577 + HP15_481 0.31 +1.2 492,577 + HP15_481 0.31 +0.5 492,577 + HP15_481 0.31 -0.4 492,577 + HP15_481 0.31 -0.1 492,577 + HP15_481 0.31 -0.4 492,585 - HP15_481 0.32 -0.3 492,585 - HP15_481 0.32 +0.1 492,666 + HP15_481 0.37 +0.9 492,688 - HP15_481 0.39 -1.1 492,783 + HP15_481 0.45 +0.3 492,827 + HP15_481 0.48 -0.6 492,842 + HP15_481 0.49 -1.7 492,884 - HP15_481 0.52 +0.4
Or see this region's nucleotide sequence