Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4055 and HP15_4056 are separated by 220 nucleotides HP15_4056 and HP15_4057 are separated by 7 nucleotides HP15_4057 and HP15_4058 are separated by 84 nucleotides HP15_4058 and HP15_4059 overlap by 17 nucleotides
HP15_4055: HP15_4055 - membrane protein containing DUF81, at 4,289,983 to 4,290,705
_4055
HP15_4056: HP15_4056 - SEC-C motif domain protein, at 4,290,926 to 4,291,273
_4056
HP15_4057: HP15_4057 - protein containing rhodanese-like domains, at 4,291,281 to 4,291,661
_4057
HP15_4058: HP15_4058 - putative thiol-disulfide oxidoreductase DCC, at 4,291,746 to 4,292,120
_4058
HP15_4059: HP15_4059 - protein containing CHAD domain, at 4,292,104 to 4,293,456
_4059
Position (kb) 4291
4292 Strain fitness (log2 ratio) -2
-1
0
1 at 4290.337 kb on - strand, within HP15_4055 at 4290.342 kb on - strand, within HP15_4055 at 4290.361 kb on - strand, within HP15_4055 at 4290.375 kb on + strand, within HP15_4055 at 4290.450 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.505 kb on - strand, within HP15_4055 at 4290.604 kb on - strand, within HP15_4055 at 4290.744 kb on + strand at 4290.895 kb on + strand at 4291.014 kb on + strand, within HP15_4056 at 4291.093 kb on - strand, within HP15_4056 at 4291.111 kb on + strand, within HP15_4056 at 4291.111 kb on + strand, within HP15_4056 at 4291.170 kb on + strand, within HP15_4056 at 4291.170 kb on + strand, within HP15_4056 at 4291.204 kb on + strand, within HP15_4056 at 4291.258 kb on + strand at 4291.346 kb on - strand, within HP15_4057 at 4291.368 kb on + strand, within HP15_4057 at 4291.641 kb on - strand at 4291.679 kb on - strand at 4291.690 kb on + strand at 4291.692 kb on - strand at 4291.709 kb on + strand at 4291.709 kb on + strand at 4291.851 kb on + strand, within HP15_4058 at 4291.858 kb on + strand, within HP15_4058 at 4291.922 kb on + strand, within HP15_4058 at 4291.922 kb on + strand, within HP15_4058 at 4291.954 kb on + strand, within HP15_4058 at 4291.962 kb on - strand, within HP15_4058 at 4291.966 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.003 kb on + strand, within HP15_4058 at 4292.005 kb on + strand, within HP15_4058 at 4292.011 kb on - strand, within HP15_4058 at 4292.030 kb on - strand, within HP15_4058 at 4292.159 kb on + strand at 4292.303 kb on - strand, within HP15_4059 at 4292.402 kb on + strand, within HP15_4059 at 4292.402 kb on + strand, within HP15_4059 at 4292.410 kb on - strand, within HP15_4059 at 4292.532 kb on + strand, within HP15_4059 at 4292.540 kb on - strand, within HP15_4059 at 4292.609 kb on + strand, within HP15_4059
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 4,290,337 - HP15_4055 0.49 -0.5 4,290,342 - HP15_4055 0.50 -0.3 4,290,361 - HP15_4055 0.52 -0.2 4,290,375 + HP15_4055 0.54 -0.2 4,290,450 - HP15_4055 0.65 +0.1 4,290,505 - HP15_4055 0.72 -0.3 4,290,505 - HP15_4055 0.72 +0.5 4,290,505 - HP15_4055 0.72 +0.4 4,290,604 - HP15_4055 0.86 +1.4 4,290,744 + -0.2 4,290,895 + -1.9 4,291,014 + HP15_4056 0.25 +0.2 4,291,093 - HP15_4056 0.48 +0.1 4,291,111 + HP15_4056 0.53 -0.0 4,291,111 + HP15_4056 0.53 +0.8 4,291,170 + HP15_4056 0.70 +0.1 4,291,170 + HP15_4056 0.70 -0.2 4,291,204 + HP15_4056 0.80 +0.7 4,291,258 + -0.6 4,291,346 - HP15_4057 0.17 -0.2 4,291,368 + HP15_4057 0.23 -1.7 4,291,641 - -0.5 4,291,679 - -0.1 4,291,690 + +0.6 4,291,692 - +0.7 4,291,709 + -1.5 4,291,709 + +0.0 4,291,851 + HP15_4058 0.28 -0.2 4,291,858 + HP15_4058 0.30 +0.0 4,291,922 + HP15_4058 0.47 +1.4 4,291,922 + HP15_4058 0.47 -0.4 4,291,954 + HP15_4058 0.55 -0.1 4,291,962 - HP15_4058 0.58 -0.4 4,291,966 + HP15_4058 0.59 +0.7 4,292,003 + HP15_4058 0.69 -0.9 4,292,003 + HP15_4058 0.69 +0.1 4,292,003 + HP15_4058 0.69 -1.4 4,292,003 + HP15_4058 0.69 -0.4 4,292,003 + HP15_4058 0.69 +0.6 4,292,005 + HP15_4058 0.69 +0.3 4,292,011 - HP15_4058 0.71 +0.8 4,292,030 - HP15_4058 0.76 -0.2 4,292,159 + +1.1 4,292,303 - HP15_4059 0.15 +0.0 4,292,402 + HP15_4059 0.22 +0.4 4,292,402 + HP15_4059 0.22 +1.1 4,292,410 - HP15_4059 0.23 +0.8 4,292,532 + HP15_4059 0.32 +0.0 4,292,540 - HP15_4059 0.32 -0.3 4,292,609 + HP15_4059 0.37 -0.5
Or see this region's nucleotide sequence