Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3665 and HP15_3666 are separated by 67 nucleotides HP15_3666 and HP15_3667 are separated by 5 nucleotides HP15_3667 and HP15_3668 are separated by 317 nucleotides
HP15_3665: HP15_3665 - two-component sensor histidine kinase, at 3,862,291 to 3,864,273
_3665
HP15_3666: HP15_3666 - hypothetical protein, at 3,864,341 to 3,864,637
_3666
HP15_3667: HP15_3667 - membrane or secreted protein, at 3,864,643 to 3,864,879
_3667
HP15_3668: HP15_3668 - sodium/proton antiporter, at 3,865,197 to 3,866,702
_3668
Position (kb)
3864
3865 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3863.344 kb on - strand, within HP15_3665 at 3863.344 kb on - strand, within HP15_3665 at 3863.378 kb on + strand, within HP15_3665 at 3863.501 kb on + strand, within HP15_3665 at 3863.540 kb on + strand, within HP15_3665 at 3863.664 kb on + strand, within HP15_3665 at 3863.706 kb on - strand, within HP15_3665 at 3863.801 kb on + strand, within HP15_3665 at 3863.827 kb on + strand, within HP15_3665 at 3863.887 kb on + strand, within HP15_3665 at 3863.900 kb on - strand, within HP15_3665 at 3863.910 kb on - strand, within HP15_3665 at 3863.926 kb on - strand, within HP15_3665 at 3863.963 kb on - strand, within HP15_3665 at 3864.129 kb on + strand at 3864.157 kb on + strand at 3864.162 kb on + strand at 3864.165 kb on - strand at 3864.297 kb on - strand at 3864.309 kb on - strand at 3864.338 kb on + strand at 3864.338 kb on + strand at 3864.356 kb on + strand at 3864.374 kb on - strand, within HP15_3666 at 3864.469 kb on - strand, within HP15_3666 at 3864.541 kb on + strand, within HP15_3666 at 3864.656 kb on - strand at 3864.656 kb on - strand at 3864.656 kb on - strand at 3864.670 kb on + strand, within HP15_3667 at 3864.721 kb on - strand, within HP15_3667 at 3864.726 kb on + strand, within HP15_3667 at 3864.779 kb on + strand, within HP15_3667 at 3864.915 kb on + strand at 3864.923 kb on - strand at 3865.019 kb on - strand at 3865.047 kb on - strand at 3865.148 kb on - strand at 3865.166 kb on - strand at 3865.270 kb on + strand at 3865.364 kb on + strand, within HP15_3668 at 3865.364 kb on + strand, within HP15_3668 at 3865.372 kb on - strand, within HP15_3668 at 3865.388 kb on + strand, within HP15_3668 at 3865.411 kb on + strand, within HP15_3668 at 3865.460 kb on - strand, within HP15_3668 at 3865.460 kb on - strand, within HP15_3668 at 3865.460 kb on - strand, within HP15_3668 at 3865.585 kb on - strand, within HP15_3668 at 3865.593 kb on - strand, within HP15_3668
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 3,863,344 - HP15_3665 0.53 +0.9 3,863,344 - HP15_3665 0.53 -2.5 3,863,378 + HP15_3665 0.55 -1.2 3,863,501 + HP15_3665 0.61 +0.8 3,863,540 + HP15_3665 0.63 +0.5 3,863,664 + HP15_3665 0.69 -1.1 3,863,706 - HP15_3665 0.71 -0.5 3,863,801 + HP15_3665 0.76 +1.2 3,863,827 + HP15_3665 0.77 -0.7 3,863,887 + HP15_3665 0.80 +0.3 3,863,900 - HP15_3665 0.81 +0.0 3,863,910 - HP15_3665 0.82 -0.2 3,863,926 - HP15_3665 0.82 +0.3 3,863,963 - HP15_3665 0.84 -0.2 3,864,129 + +0.4 3,864,157 + -1.1 3,864,162 + +0.9 3,864,165 - -0.3 3,864,297 - -0.4 3,864,309 - +0.3 3,864,338 + +1.5 3,864,338 + +0.4 3,864,356 + -0.9 3,864,374 - HP15_3666 0.11 -0.2 3,864,469 - HP15_3666 0.43 -0.4 3,864,541 + HP15_3666 0.67 -1.0 3,864,656 - -0.4 3,864,656 - +2.2 3,864,656 - +0.1 3,864,670 + HP15_3667 0.11 +0.8 3,864,721 - HP15_3667 0.33 +1.2 3,864,726 + HP15_3667 0.35 -0.9 3,864,779 + HP15_3667 0.57 +1.0 3,864,915 + -0.8 3,864,923 - -1.6 3,865,019 - +0.3 3,865,047 - -0.1 3,865,148 - +0.8 3,865,166 - -0.2 3,865,270 + -1.0 3,865,364 + HP15_3668 0.11 -0.5 3,865,364 + HP15_3668 0.11 -0.6 3,865,372 - HP15_3668 0.12 +0.0 3,865,388 + HP15_3668 0.13 -0.2 3,865,411 + HP15_3668 0.14 +0.5 3,865,460 - HP15_3668 0.17 -0.2 3,865,460 - HP15_3668 0.17 -0.6 3,865,460 - HP15_3668 0.17 -1.2 3,865,585 - HP15_3668 0.26 -0.1 3,865,593 - HP15_3668 0.26 +0.8
Or see this region's nucleotide sequence