Strain Fitness in Marinobacter adhaerens HP15 around HP15_3666

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3665 and HP15_3666 are separated by 67 nucleotidesHP15_3666 and HP15_3667 are separated by 5 nucleotidesHP15_3667 and HP15_3668 are separated by 317 nucleotides HP15_3665: HP15_3665 - two-component sensor histidine kinase, at 3,862,291 to 3,864,273 _3665 HP15_3666: HP15_3666 - hypothetical protein, at 3,864,341 to 3,864,637 _3666 HP15_3667: HP15_3667 - membrane or secreted protein, at 3,864,643 to 3,864,879 _3667 HP15_3668: HP15_3668 - sodium/proton antiporter, at 3,865,197 to 3,866,702 _3668 Position (kb) 3864 3865Strain fitness (log2 ratio) -2 -1 0 1 2at 3863.344 kb on - strand, within HP15_3665at 3863.344 kb on - strand, within HP15_3665at 3863.378 kb on + strand, within HP15_3665at 3863.501 kb on + strand, within HP15_3665at 3863.540 kb on + strand, within HP15_3665at 3863.664 kb on + strand, within HP15_3665at 3863.706 kb on - strand, within HP15_3665at 3863.801 kb on + strand, within HP15_3665at 3863.827 kb on + strand, within HP15_3665at 3863.887 kb on + strand, within HP15_3665at 3863.900 kb on - strand, within HP15_3665at 3863.910 kb on - strand, within HP15_3665at 3863.926 kb on - strand, within HP15_3665at 3863.963 kb on - strand, within HP15_3665at 3864.129 kb on + strandat 3864.157 kb on + strandat 3864.162 kb on + strandat 3864.165 kb on - strandat 3864.297 kb on - strandat 3864.309 kb on - strandat 3864.338 kb on + strandat 3864.338 kb on + strandat 3864.356 kb on + strandat 3864.374 kb on - strand, within HP15_3666at 3864.469 kb on - strand, within HP15_3666at 3864.541 kb on + strand, within HP15_3666at 3864.656 kb on - strandat 3864.656 kb on - strandat 3864.656 kb on - strandat 3864.670 kb on + strand, within HP15_3667at 3864.721 kb on - strand, within HP15_3667at 3864.726 kb on + strand, within HP15_3667at 3864.779 kb on + strand, within HP15_3667at 3864.915 kb on + strandat 3864.923 kb on - strandat 3865.019 kb on - strandat 3865.047 kb on - strandat 3865.148 kb on - strandat 3865.166 kb on - strandat 3865.270 kb on + strandat 3865.364 kb on + strand, within HP15_3668at 3865.364 kb on + strand, within HP15_3668at 3865.372 kb on - strand, within HP15_3668at 3865.388 kb on + strand, within HP15_3668at 3865.411 kb on + strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.460 kb on - strand, within HP15_3668at 3865.585 kb on - strand, within HP15_3668at 3865.593 kb on - strand, within HP15_3668

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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3,863,344 - HP15_3665 0.53 +0.9
3,863,344 - HP15_3665 0.53 -2.5
3,863,378 + HP15_3665 0.55 -1.2
3,863,501 + HP15_3665 0.61 +0.8
3,863,540 + HP15_3665 0.63 +0.5
3,863,664 + HP15_3665 0.69 -1.1
3,863,706 - HP15_3665 0.71 -0.5
3,863,801 + HP15_3665 0.76 +1.2
3,863,827 + HP15_3665 0.77 -0.7
3,863,887 + HP15_3665 0.80 +0.3
3,863,900 - HP15_3665 0.81 +0.0
3,863,910 - HP15_3665 0.82 -0.2
3,863,926 - HP15_3665 0.82 +0.3
3,863,963 - HP15_3665 0.84 -0.2
3,864,129 + +0.4
3,864,157 + -1.1
3,864,162 + +0.9
3,864,165 - -0.3
3,864,297 - -0.4
3,864,309 - +0.3
3,864,338 + +1.5
3,864,338 + +0.4
3,864,356 + -0.9
3,864,374 - HP15_3666 0.11 -0.2
3,864,469 - HP15_3666 0.43 -0.4
3,864,541 + HP15_3666 0.67 -1.0
3,864,656 - -0.4
3,864,656 - +2.2
3,864,656 - +0.1
3,864,670 + HP15_3667 0.11 +0.8
3,864,721 - HP15_3667 0.33 +1.2
3,864,726 + HP15_3667 0.35 -0.9
3,864,779 + HP15_3667 0.57 +1.0
3,864,915 + -0.8
3,864,923 - -1.6
3,865,019 - +0.3
3,865,047 - -0.1
3,865,148 - +0.8
3,865,166 - -0.2
3,865,270 + -1.0
3,865,364 + HP15_3668 0.11 -0.5
3,865,364 + HP15_3668 0.11 -0.6
3,865,372 - HP15_3668 0.12 +0.0
3,865,388 + HP15_3668 0.13 -0.2
3,865,411 + HP15_3668 0.14 +0.5
3,865,460 - HP15_3668 0.17 -0.2
3,865,460 - HP15_3668 0.17 -0.6
3,865,460 - HP15_3668 0.17 -1.2
3,865,585 - HP15_3668 0.26 -0.1
3,865,593 - HP15_3668 0.26 +0.8

Or see this region's nucleotide sequence