Strain Fitness in Marinobacter adhaerens HP15 around HP15_3044

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3043 and HP15_3044 are separated by 162 nucleotidesHP15_3044 and HP15_3045 are separated by 331 nucleotides HP15_3043: HP15_3043 - DNA polymerase III, epsilon subunit, at 3,190,278 to 3,191,738 _3043 HP15_3044: HP15_3044 - conserved hypothetical protein, secreted, at 3,191,901 to 3,193,034 _3044 HP15_3045: HP15_3045 - pyruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase, at 3,193,366 to 3,195,030 _3045 Position (kb) 3191 3192 3193 3194Strain fitness (log2 ratio) -1 0 1 2 3at 3190.914 kb on - strand, within HP15_3043at 3190.924 kb on - strand, within HP15_3043at 3190.964 kb on + strand, within HP15_3043at 3190.972 kb on - strand, within HP15_3043at 3190.991 kb on + strand, within HP15_3043at 3190.991 kb on + strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3190.999 kb on - strand, within HP15_3043at 3191.008 kb on + strand, within HP15_3043at 3191.010 kb on + strand, within HP15_3043at 3191.018 kb on - strand, within HP15_3043at 3191.045 kb on + strand, within HP15_3043at 3191.116 kb on - strand, within HP15_3043at 3191.116 kb on - strand, within HP15_3043at 3191.124 kb on - strand, within HP15_3043at 3191.134 kb on + strand, within HP15_3043at 3191.293 kb on + strand, within HP15_3043at 3191.360 kb on + strand, within HP15_3043at 3191.466 kb on + strand, within HP15_3043at 3191.467 kb on + strand, within HP15_3043at 3191.475 kb on - strand, within HP15_3043at 3191.475 kb on - strand, within HP15_3043at 3191.623 kb on + strandat 3191.679 kb on + strandat 3191.988 kb on - strandat 3191.990 kb on + strandat 3191.998 kb on - strandat 3192.024 kb on + strand, within HP15_3044at 3192.041 kb on - strand, within HP15_3044at 3192.041 kb on - strand, within HP15_3044at 3192.327 kb on + strand, within HP15_3044at 3192.469 kb on + strand, within HP15_3044at 3192.470 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.477 kb on - strand, within HP15_3044at 3192.478 kb on - strand, within HP15_3044at 3192.518 kb on + strand, within HP15_3044at 3192.605 kb on - strand, within HP15_3044at 3192.661 kb on - strand, within HP15_3044at 3192.761 kb on - strand, within HP15_3044at 3192.786 kb on - strand, within HP15_3044at 3192.932 kb on - strandat 3192.961 kb on - strandat 3193.125 kb on - strandat 3193.140 kb on - strandat 3193.158 kb on + strandat 3193.244 kb on + strandat 3193.252 kb on - strandat 3193.305 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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3,190,914 - HP15_3043 0.44 -0.2
3,190,924 - HP15_3043 0.44 -0.8
3,190,964 + HP15_3043 0.47 -0.7
3,190,972 - HP15_3043 0.48 +1.9
3,190,991 + HP15_3043 0.49 +0.2
3,190,991 + HP15_3043 0.49 +0.8
3,190,999 - HP15_3043 0.49 -0.6
3,190,999 - HP15_3043 0.49 +2.4
3,190,999 - HP15_3043 0.49 -0.5
3,190,999 - HP15_3043 0.49 +1.0
3,190,999 - HP15_3043 0.49 -0.0
3,191,008 + HP15_3043 0.50 +0.8
3,191,010 + HP15_3043 0.50 +3.5
3,191,018 - HP15_3043 0.51 -0.5
3,191,045 + HP15_3043 0.52 +0.6
3,191,116 - HP15_3043 0.57 +1.5
3,191,116 - HP15_3043 0.57 +0.8
3,191,124 - HP15_3043 0.58 +1.8
3,191,134 + HP15_3043 0.59 +0.8
3,191,293 + HP15_3043 0.69 +0.1
3,191,360 + HP15_3043 0.74 +0.4
3,191,466 + HP15_3043 0.81 +0.6
3,191,467 + HP15_3043 0.81 +0.9
3,191,475 - HP15_3043 0.82 -0.5
3,191,475 - HP15_3043 0.82 -0.5
3,191,623 + +0.9
3,191,679 + -0.5
3,191,988 - +0.3
3,191,990 + -1.1
3,191,998 - +0.1
3,192,024 + HP15_3044 0.11 -1.0
3,192,041 - HP15_3044 0.12 +0.0
3,192,041 - HP15_3044 0.12 +1.7
3,192,327 + HP15_3044 0.38 +0.4
3,192,469 + HP15_3044 0.50 +1.3
3,192,470 - HP15_3044 0.50 +1.1
3,192,477 - HP15_3044 0.51 +2.0
3,192,477 - HP15_3044 0.51 -0.0
3,192,477 - HP15_3044 0.51 +0.7
3,192,478 - HP15_3044 0.51 +0.9
3,192,518 + HP15_3044 0.54 +0.3
3,192,605 - HP15_3044 0.62 +1.2
3,192,661 - HP15_3044 0.67 +2.3
3,192,761 - HP15_3044 0.76 +1.0
3,192,786 - HP15_3044 0.78 +1.6
3,192,932 - +0.3
3,192,961 - +0.8
3,193,125 - +0.5
3,193,140 - +1.3
3,193,158 + +1.6
3,193,244 + +0.4
3,193,252 - +1.9
3,193,305 - -0.3

Or see this region's nucleotide sequence