Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2766 and HP15_2767 are separated by 168 nucleotides HP15_2767 and HP15_2768 are separated by 49 nucleotides HP15_2768 and HP15_2769 overlap by 4 nucleotides HP15_2769 and HP15_2770 are separated by 107 nucleotides
HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520
_2766
HP15_2767: HP15_2767 - OmpA family protein-like protein, at 2,919,689 to 2,920,297
_2767
HP15_2768: HP15_2768 - membrane protein, at 2,920,347 to 2,922,854
_2768
HP15_2769: HP15_2769 - hypothetical protein, at 2,922,851 to 2,923,009
_2769
HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400
_2770
Position (kb)
2920
2921
2922
2923 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2919.417 kb on + strand at 2919.436 kb on - strand at 2919.436 kb on - strand at 2919.484 kb on - strand at 2919.583 kb on - strand at 2919.750 kb on + strand, within HP15_2767 at 2919.758 kb on + strand, within HP15_2767 at 2919.766 kb on - strand, within HP15_2767 at 2919.947 kb on - strand, within HP15_2767 at 2919.990 kb on - strand, within HP15_2767 at 2920.048 kb on - strand, within HP15_2767 at 2920.133 kb on - strand, within HP15_2767 at 2920.230 kb on + strand, within HP15_2767 at 2920.268 kb on + strand at 2920.277 kb on - strand at 2920.430 kb on - strand at 2920.435 kb on - strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.446 kb on + strand at 2920.454 kb on - strand at 2920.633 kb on - strand, within HP15_2768 at 2920.773 kb on - strand, within HP15_2768 at 2920.808 kb on - strand, within HP15_2768 at 2920.971 kb on - strand, within HP15_2768 at 2920.971 kb on - strand, within HP15_2768 at 2920.989 kb on + strand, within HP15_2768 at 2920.997 kb on - strand, within HP15_2768 at 2921.016 kb on - strand, within HP15_2768 at 2921.023 kb on + strand, within HP15_2768 at 2921.175 kb on - strand, within HP15_2768 at 2921.266 kb on + strand, within HP15_2768 at 2921.281 kb on + strand, within HP15_2768 at 2921.286 kb on + strand, within HP15_2768 at 2921.286 kb on + strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768 at 2921.294 kb on - strand, within HP15_2768 at 2921.858 kb on + strand, within HP15_2768 at 2921.880 kb on - strand, within HP15_2768 at 2921.893 kb on + strand, within HP15_2768 at 2921.962 kb on + strand, within HP15_2768 at 2921.970 kb on - strand, within HP15_2768 at 2921.999 kb on - strand, within HP15_2768 at 2922.028 kb on + strand, within HP15_2768 at 2922.063 kb on - strand, within HP15_2768 at 2922.068 kb on + strand, within HP15_2768 at 2922.086 kb on + strand, within HP15_2768 at 2922.094 kb on - strand, within HP15_2768 at 2922.096 kb on - strand, within HP15_2768 at 2922.160 kb on - strand, within HP15_2768 at 2922.195 kb on - strand, within HP15_2768 at 2922.202 kb on + strand, within HP15_2768 at 2922.210 kb on - strand, within HP15_2768 at 2922.251 kb on - strand, within HP15_2768 at 2922.256 kb on + strand, within HP15_2768 at 2922.269 kb on - strand, within HP15_2768 at 2922.415 kb on - strand, within HP15_2768 at 2922.452 kb on - strand, within HP15_2768 at 2922.459 kb on + strand, within HP15_2768 at 2922.469 kb on + strand, within HP15_2768 at 2922.473 kb on + strand, within HP15_2768 at 2922.503 kb on - strand, within HP15_2768 at 2922.517 kb on - strand, within HP15_2768 at 2922.560 kb on - strand, within HP15_2768 at 2922.700 kb on - strand at 2922.712 kb on - strand at 2922.726 kb on + strand at 2922.841 kb on - strand at 2922.949 kb on - strand, within HP15_2769 at 2923.078 kb on - strand at 2923.083 kb on + strand at 2923.083 kb on + strand at 2923.091 kb on - strand at 2923.091 kb on - strand at 2923.091 kb on - strand at 2923.097 kb on - strand at 2923.128 kb on + strand at 2923.129 kb on - strand at 2923.149 kb on - strand at 2923.154 kb on - strand at 2923.169 kb on + strand at 2923.194 kb on + strand at 2923.294 kb on + strand, within HP15_2770 at 2923.317 kb on + strand, within HP15_2770 at 2923.323 kb on + strand, within HP15_2770 at 2923.339 kb on - strand, within HP15_2770 at 2923.339 kb on - strand, within HP15_2770 at 2923.341 kb on + strand, within HP15_2770 at 2923.344 kb on - strand, within HP15_2770 at 2923.370 kb on + strand, within HP15_2770 at 2923.371 kb on - strand, within HP15_2770 at 2923.371 kb on - strand, within HP15_2770 at 2923.371 kb on - strand, within HP15_2770 at 2923.371 kb on - strand, within HP15_2770 at 2923.373 kb on - strand, within HP15_2770 at 2923.383 kb on - strand, within HP15_2770 at 2923.467 kb on - strand, within HP15_2770 at 2923.559 kb on + strand, within HP15_2770 at 2923.590 kb on + strand, within HP15_2770 at 2923.599 kb on + strand, within HP15_2770 at 2923.641 kb on + strand, within HP15_2770 at 2923.691 kb on + strand, within HP15_2770 at 2923.691 kb on + strand, within HP15_2770 at 2923.696 kb on + strand, within HP15_2770 at 2923.699 kb on - strand, within HP15_2770 at 2923.737 kb on + strand, within HP15_2770 at 2923.849 kb on + strand, within HP15_2770
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 2,919,417 + -0.0 2,919,436 - -0.8 2,919,436 - +0.8 2,919,484 - -0.1 2,919,583 - +0.4 2,919,750 + HP15_2767 0.10 +1.5 2,919,758 + HP15_2767 0.11 +0.2 2,919,766 - HP15_2767 0.13 +0.6 2,919,947 - HP15_2767 0.42 -0.6 2,919,990 - HP15_2767 0.49 +0.0 2,920,048 - HP15_2767 0.59 +1.1 2,920,133 - HP15_2767 0.73 -0.7 2,920,230 + HP15_2767 0.89 +0.3 2,920,268 + +0.9 2,920,277 - +0.6 2,920,430 - +0.2 2,920,435 - -0.2 2,920,446 + +1.3 2,920,446 + -0.2 2,920,446 + -2.9 2,920,446 + -0.4 2,920,454 - +0.5 2,920,633 - HP15_2768 0.11 -0.4 2,920,773 - HP15_2768 0.17 +0.6 2,920,808 - HP15_2768 0.18 +0.2 2,920,971 - HP15_2768 0.25 +1.3 2,920,971 - HP15_2768 0.25 -0.5 2,920,989 + HP15_2768 0.26 +1.9 2,920,997 - HP15_2768 0.26 +0.4 2,921,016 - HP15_2768 0.27 +1.4 2,921,023 + HP15_2768 0.27 +1.0 2,921,175 - HP15_2768 0.33 +1.3 2,921,266 + HP15_2768 0.37 +1.6 2,921,281 + HP15_2768 0.37 -0.2 2,921,286 + HP15_2768 0.37 -0.2 2,921,286 + HP15_2768 0.37 +0.6 2,921,294 - HP15_2768 0.38 +0.8 2,921,294 - HP15_2768 0.38 -0.7 2,921,294 - HP15_2768 0.38 -1.2 2,921,858 + HP15_2768 0.60 +1.3 2,921,880 - HP15_2768 0.61 +0.9 2,921,893 + HP15_2768 0.62 -0.7 2,921,962 + HP15_2768 0.64 +1.0 2,921,970 - HP15_2768 0.65 +0.4 2,921,999 - HP15_2768 0.66 +0.2 2,922,028 + HP15_2768 0.67 +1.4 2,922,063 - HP15_2768 0.68 +0.4 2,922,068 + HP15_2768 0.69 -0.2 2,922,086 + HP15_2768 0.69 -0.4 2,922,094 - HP15_2768 0.70 +1.5 2,922,096 - HP15_2768 0.70 +0.1 2,922,160 - HP15_2768 0.72 -0.4 2,922,195 - HP15_2768 0.74 -0.1 2,922,202 + HP15_2768 0.74 -0.2 2,922,210 - HP15_2768 0.74 -0.3 2,922,251 - HP15_2768 0.76 +0.2 2,922,256 + HP15_2768 0.76 +0.9 2,922,269 - HP15_2768 0.77 -0.3 2,922,415 - HP15_2768 0.82 +2.2 2,922,452 - HP15_2768 0.84 -0.2 2,922,459 + HP15_2768 0.84 +1.3 2,922,469 + HP15_2768 0.85 -0.1 2,922,473 + HP15_2768 0.85 -0.2 2,922,503 - HP15_2768 0.86 -1.6 2,922,517 - HP15_2768 0.87 -0.0 2,922,560 - HP15_2768 0.88 +0.8 2,922,700 - +0.6 2,922,712 - +1.2 2,922,726 + -0.4 2,922,841 - +0.1 2,922,949 - HP15_2769 0.62 -0.6 2,923,078 - +0.8 2,923,083 + -0.3 2,923,083 + -0.2 2,923,091 - -0.3 2,923,091 - -0.2 2,923,091 - -0.8 2,923,097 - +0.0 2,923,128 + +1.3 2,923,129 - -0.0 2,923,149 - -0.1 2,923,154 - -0.1 2,923,169 + +1.1 2,923,194 + -0.7 2,923,294 + HP15_2770 0.14 -0.8 2,923,317 + HP15_2770 0.16 -0.1 2,923,323 + HP15_2770 0.16 +0.8 2,923,339 - HP15_2770 0.17 +0.6 2,923,339 - HP15_2770 0.17 -0.3 2,923,341 + HP15_2770 0.17 +0.8 2,923,344 - HP15_2770 0.18 +1.2 2,923,370 + HP15_2770 0.20 +1.1 2,923,371 - HP15_2770 0.20 -0.5 2,923,371 - HP15_2770 0.20 +0.1 2,923,371 - HP15_2770 0.20 -0.2 2,923,371 - HP15_2770 0.20 +1.3 2,923,373 - HP15_2770 0.20 -0.4 2,923,383 - HP15_2770 0.21 +0.7 2,923,467 - HP15_2770 0.27 -1.2 2,923,559 + HP15_2770 0.34 +0.2 2,923,590 + HP15_2770 0.37 +0.9 2,923,599 + HP15_2770 0.38 +1.2 2,923,641 + HP15_2770 0.41 +1.4 2,923,691 + HP15_2770 0.45 -0.9 2,923,691 + HP15_2770 0.45 -0.2 2,923,696 + HP15_2770 0.45 -0.3 2,923,699 - HP15_2770 0.45 +0.8 2,923,737 + HP15_2770 0.48 +0.9 2,923,849 + HP15_2770 0.57 -0.6
Or see this region's nucleotide sequence