Strain Fitness in Marinobacter adhaerens HP15 around HP15_2768

Experiment: acetate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2766 and HP15_2767 are separated by 168 nucleotidesHP15_2767 and HP15_2768 are separated by 49 nucleotidesHP15_2768 and HP15_2769 overlap by 4 nucleotidesHP15_2769 and HP15_2770 are separated by 107 nucleotides HP15_2766: HP15_2766 - sensory box/GGDEF family protein, at 2,918,486 to 2,919,520 _2766 HP15_2767: HP15_2767 - OmpA family protein-like protein, at 2,919,689 to 2,920,297 _2767 HP15_2768: HP15_2768 - membrane protein, at 2,920,347 to 2,922,854 _2768 HP15_2769: HP15_2769 - hypothetical protein, at 2,922,851 to 2,923,009 _2769 HP15_2770: HP15_2770 - permease for cytosine/purines uracil thiamine allantoin, at 2,923,117 to 2,924,400 _2770 Position (kb) 2920 2921 2922 2923Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2919.417 kb on + strandat 2919.436 kb on - strandat 2919.436 kb on - strandat 2919.484 kb on - strandat 2919.583 kb on - strandat 2919.750 kb on + strand, within HP15_2767at 2919.758 kb on + strand, within HP15_2767at 2919.766 kb on - strand, within HP15_2767at 2919.947 kb on - strand, within HP15_2767at 2919.990 kb on - strand, within HP15_2767at 2920.048 kb on - strand, within HP15_2767at 2920.133 kb on - strand, within HP15_2767at 2920.230 kb on + strand, within HP15_2767at 2920.268 kb on + strandat 2920.277 kb on - strandat 2920.430 kb on - strandat 2920.435 kb on - strandat 2920.446 kb on + strandat 2920.446 kb on + strandat 2920.446 kb on + strandat 2920.446 kb on + strandat 2920.454 kb on - strandat 2920.633 kb on - strand, within HP15_2768at 2920.773 kb on - strand, within HP15_2768at 2920.808 kb on - strand, within HP15_2768at 2920.971 kb on - strand, within HP15_2768at 2920.971 kb on - strand, within HP15_2768at 2920.989 kb on + strand, within HP15_2768at 2920.997 kb on - strand, within HP15_2768at 2921.016 kb on - strand, within HP15_2768at 2921.023 kb on + strand, within HP15_2768at 2921.175 kb on - strand, within HP15_2768at 2921.266 kb on + strand, within HP15_2768at 2921.281 kb on + strand, within HP15_2768at 2921.286 kb on + strand, within HP15_2768at 2921.286 kb on + strand, within HP15_2768at 2921.294 kb on - strand, within HP15_2768at 2921.294 kb on - strand, within HP15_2768at 2921.294 kb on - strand, within HP15_2768at 2921.858 kb on + strand, within HP15_2768at 2921.880 kb on - strand, within HP15_2768at 2921.893 kb on + strand, within HP15_2768at 2921.962 kb on + strand, within HP15_2768at 2921.970 kb on - strand, within HP15_2768at 2921.999 kb on - strand, within HP15_2768at 2922.028 kb on + strand, within HP15_2768at 2922.063 kb on - strand, within HP15_2768at 2922.068 kb on + strand, within HP15_2768at 2922.086 kb on + strand, within HP15_2768at 2922.094 kb on - strand, within HP15_2768at 2922.096 kb on - strand, within HP15_2768at 2922.160 kb on - strand, within HP15_2768at 2922.195 kb on - strand, within HP15_2768at 2922.202 kb on + strand, within HP15_2768at 2922.210 kb on - strand, within HP15_2768at 2922.251 kb on - strand, within HP15_2768at 2922.256 kb on + strand, within HP15_2768at 2922.269 kb on - strand, within HP15_2768at 2922.415 kb on - strand, within HP15_2768at 2922.452 kb on - strand, within HP15_2768at 2922.459 kb on + strand, within HP15_2768at 2922.469 kb on + strand, within HP15_2768at 2922.473 kb on + strand, within HP15_2768at 2922.503 kb on - strand, within HP15_2768at 2922.517 kb on - strand, within HP15_2768at 2922.560 kb on - strand, within HP15_2768at 2922.700 kb on - strandat 2922.712 kb on - strandat 2922.726 kb on + strandat 2922.841 kb on - strandat 2922.949 kb on - strand, within HP15_2769at 2923.078 kb on - strandat 2923.083 kb on + strandat 2923.083 kb on + strandat 2923.091 kb on - strandat 2923.091 kb on - strandat 2923.091 kb on - strandat 2923.097 kb on - strandat 2923.128 kb on + strandat 2923.129 kb on - strandat 2923.149 kb on - strandat 2923.154 kb on - strandat 2923.169 kb on + strandat 2923.194 kb on + strandat 2923.294 kb on + strand, within HP15_2770at 2923.317 kb on + strand, within HP15_2770at 2923.323 kb on + strand, within HP15_2770at 2923.339 kb on - strand, within HP15_2770at 2923.339 kb on - strand, within HP15_2770at 2923.341 kb on + strand, within HP15_2770at 2923.344 kb on - strand, within HP15_2770at 2923.370 kb on + strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.371 kb on - strand, within HP15_2770at 2923.373 kb on - strand, within HP15_2770at 2923.383 kb on - strand, within HP15_2770at 2923.467 kb on - strand, within HP15_2770at 2923.559 kb on + strand, within HP15_2770at 2923.590 kb on + strand, within HP15_2770at 2923.599 kb on + strand, within HP15_2770at 2923.641 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.691 kb on + strand, within HP15_2770at 2923.696 kb on + strand, within HP15_2770at 2923.699 kb on - strand, within HP15_2770at 2923.737 kb on + strand, within HP15_2770at 2923.849 kb on + strand, within HP15_2770

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate
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2,919,417 + -0.0
2,919,436 - -0.8
2,919,436 - +0.8
2,919,484 - -0.1
2,919,583 - +0.4
2,919,750 + HP15_2767 0.10 +1.5
2,919,758 + HP15_2767 0.11 +0.2
2,919,766 - HP15_2767 0.13 +0.6
2,919,947 - HP15_2767 0.42 -0.6
2,919,990 - HP15_2767 0.49 +0.0
2,920,048 - HP15_2767 0.59 +1.1
2,920,133 - HP15_2767 0.73 -0.7
2,920,230 + HP15_2767 0.89 +0.3
2,920,268 + +0.9
2,920,277 - +0.6
2,920,430 - +0.2
2,920,435 - -0.2
2,920,446 + +1.3
2,920,446 + -0.2
2,920,446 + -2.9
2,920,446 + -0.4
2,920,454 - +0.5
2,920,633 - HP15_2768 0.11 -0.4
2,920,773 - HP15_2768 0.17 +0.6
2,920,808 - HP15_2768 0.18 +0.2
2,920,971 - HP15_2768 0.25 +1.3
2,920,971 - HP15_2768 0.25 -0.5
2,920,989 + HP15_2768 0.26 +1.9
2,920,997 - HP15_2768 0.26 +0.4
2,921,016 - HP15_2768 0.27 +1.4
2,921,023 + HP15_2768 0.27 +1.0
2,921,175 - HP15_2768 0.33 +1.3
2,921,266 + HP15_2768 0.37 +1.6
2,921,281 + HP15_2768 0.37 -0.2
2,921,286 + HP15_2768 0.37 -0.2
2,921,286 + HP15_2768 0.37 +0.6
2,921,294 - HP15_2768 0.38 +0.8
2,921,294 - HP15_2768 0.38 -0.7
2,921,294 - HP15_2768 0.38 -1.2
2,921,858 + HP15_2768 0.60 +1.3
2,921,880 - HP15_2768 0.61 +0.9
2,921,893 + HP15_2768 0.62 -0.7
2,921,962 + HP15_2768 0.64 +1.0
2,921,970 - HP15_2768 0.65 +0.4
2,921,999 - HP15_2768 0.66 +0.2
2,922,028 + HP15_2768 0.67 +1.4
2,922,063 - HP15_2768 0.68 +0.4
2,922,068 + HP15_2768 0.69 -0.2
2,922,086 + HP15_2768 0.69 -0.4
2,922,094 - HP15_2768 0.70 +1.5
2,922,096 - HP15_2768 0.70 +0.1
2,922,160 - HP15_2768 0.72 -0.4
2,922,195 - HP15_2768 0.74 -0.1
2,922,202 + HP15_2768 0.74 -0.2
2,922,210 - HP15_2768 0.74 -0.3
2,922,251 - HP15_2768 0.76 +0.2
2,922,256 + HP15_2768 0.76 +0.9
2,922,269 - HP15_2768 0.77 -0.3
2,922,415 - HP15_2768 0.82 +2.2
2,922,452 - HP15_2768 0.84 -0.2
2,922,459 + HP15_2768 0.84 +1.3
2,922,469 + HP15_2768 0.85 -0.1
2,922,473 + HP15_2768 0.85 -0.2
2,922,503 - HP15_2768 0.86 -1.6
2,922,517 - HP15_2768 0.87 -0.0
2,922,560 - HP15_2768 0.88 +0.8
2,922,700 - +0.6
2,922,712 - +1.2
2,922,726 + -0.4
2,922,841 - +0.1
2,922,949 - HP15_2769 0.62 -0.6
2,923,078 - +0.8
2,923,083 + -0.3
2,923,083 + -0.2
2,923,091 - -0.3
2,923,091 - -0.2
2,923,091 - -0.8
2,923,097 - +0.0
2,923,128 + +1.3
2,923,129 - -0.0
2,923,149 - -0.1
2,923,154 - -0.1
2,923,169 + +1.1
2,923,194 + -0.7
2,923,294 + HP15_2770 0.14 -0.8
2,923,317 + HP15_2770 0.16 -0.1
2,923,323 + HP15_2770 0.16 +0.8
2,923,339 - HP15_2770 0.17 +0.6
2,923,339 - HP15_2770 0.17 -0.3
2,923,341 + HP15_2770 0.17 +0.8
2,923,344 - HP15_2770 0.18 +1.2
2,923,370 + HP15_2770 0.20 +1.1
2,923,371 - HP15_2770 0.20 -0.5
2,923,371 - HP15_2770 0.20 +0.1
2,923,371 - HP15_2770 0.20 -0.2
2,923,371 - HP15_2770 0.20 +1.3
2,923,373 - HP15_2770 0.20 -0.4
2,923,383 - HP15_2770 0.21 +0.7
2,923,467 - HP15_2770 0.27 -1.2
2,923,559 + HP15_2770 0.34 +0.2
2,923,590 + HP15_2770 0.37 +0.9
2,923,599 + HP15_2770 0.38 +1.2
2,923,641 + HP15_2770 0.41 +1.4
2,923,691 + HP15_2770 0.45 -0.9
2,923,691 + HP15_2770 0.45 -0.2
2,923,696 + HP15_2770 0.45 -0.3
2,923,699 - HP15_2770 0.45 +0.8
2,923,737 + HP15_2770 0.48 +0.9
2,923,849 + HP15_2770 0.57 -0.6

Or see this region's nucleotide sequence