Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2045 and HP15_2046 are separated by 13 nucleotides HP15_2046 and HP15_2047 are separated by 17 nucleotides HP15_2047 and HP15_2048 overlap by 4 nucleotides
HP15_2045: HP15_2045 - DNA-binding transcriptional repressor FabR, at 2,144,365 to 2,144,982
_2045
HP15_2046: HP15_2046 - histidine triad (HIT) protein, at 2,144,996 to 2,145,436
_2046
HP15_2047: HP15_2047 - UDP-glucose 6-dehydrogenase, at 2,145,454 to 2,146,797
_2047
HP15_2048: HP15_2048 - UDP-glucose 4-epimerase, at 2,146,794 to 2,147,822
_2048
Position (kb)
2145
2146
2147 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2144.569 kb on + strand, within HP15_2045 at 2144.588 kb on - strand, within HP15_2045 at 2144.715 kb on + strand, within HP15_2045 at 2144.800 kb on + strand, within HP15_2045 at 2144.910 kb on + strand, within HP15_2045 at 2144.930 kb on - strand at 2144.964 kb on - strand at 2144.989 kb on - strand at 2145.099 kb on + strand, within HP15_2046 at 2145.100 kb on + strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046 at 2145.128 kb on - strand, within HP15_2046 at 2145.217 kb on - strand, within HP15_2046 at 2145.324 kb on - strand, within HP15_2046 at 2145.461 kb on + strand at 2145.469 kb on - strand at 2145.469 kb on - strand at 2145.469 kb on - strand at 2145.607 kb on - strand, within HP15_2047 at 2145.668 kb on - strand, within HP15_2047 at 2145.683 kb on - strand, within HP15_2047 at 2145.773 kb on + strand, within HP15_2047 at 2145.784 kb on + strand, within HP15_2047 at 2145.875 kb on + strand, within HP15_2047 at 2146.025 kb on + strand, within HP15_2047 at 2146.186 kb on + strand, within HP15_2047 at 2146.259 kb on - strand, within HP15_2047 at 2146.411 kb on - strand, within HP15_2047 at 2146.441 kb on - strand, within HP15_2047 at 2146.617 kb on + strand, within HP15_2047 at 2146.625 kb on - strand, within HP15_2047 at 2146.676 kb on + strand at 2146.875 kb on - strand at 2146.922 kb on + strand, within HP15_2048 at 2147.059 kb on - strand, within HP15_2048 at 2147.107 kb on + strand, within HP15_2048 at 2147.137 kb on + strand, within HP15_2048 at 2147.197 kb on + strand, within HP15_2048 at 2147.376 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.537 kb on - strand, within HP15_2048 at 2147.719 kb on + strand, within HP15_2048
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 2,144,569 + HP15_2045 0.33 -0.4 2,144,588 - HP15_2045 0.36 -0.7 2,144,715 + HP15_2045 0.57 -0.5 2,144,800 + HP15_2045 0.70 +1.1 2,144,910 + HP15_2045 0.88 +0.6 2,144,930 - +0.2 2,144,964 - +1.3 2,144,989 - -0.7 2,145,099 + HP15_2046 0.23 +2.1 2,145,100 + HP15_2046 0.24 +0.9 2,145,128 - HP15_2046 0.30 -2.1 2,145,128 - HP15_2046 0.30 +1.0 2,145,217 - HP15_2046 0.50 -0.5 2,145,324 - HP15_2046 0.74 +0.3 2,145,461 + +0.3 2,145,469 - -0.4 2,145,469 - +0.5 2,145,469 - -0.7 2,145,607 - HP15_2047 0.11 -0.6 2,145,668 - HP15_2047 0.16 +0.8 2,145,683 - HP15_2047 0.17 -0.2 2,145,773 + HP15_2047 0.24 -0.4 2,145,784 + HP15_2047 0.25 -0.6 2,145,875 + HP15_2047 0.31 +0.4 2,146,025 + HP15_2047 0.42 +0.4 2,146,186 + HP15_2047 0.54 +0.7 2,146,259 - HP15_2047 0.60 -0.5 2,146,411 - HP15_2047 0.71 -0.9 2,146,441 - HP15_2047 0.73 +1.3 2,146,617 + HP15_2047 0.87 -0.1 2,146,625 - HP15_2047 0.87 +0.1 2,146,676 + -1.0 2,146,875 - +1.6 2,146,922 + HP15_2048 0.12 -0.1 2,147,059 - HP15_2048 0.26 +1.0 2,147,107 + HP15_2048 0.30 +1.6 2,147,137 + HP15_2048 0.33 +1.3 2,147,197 + HP15_2048 0.39 +1.2 2,147,376 - HP15_2048 0.57 +1.5 2,147,537 - HP15_2048 0.72 +0.2 2,147,537 - HP15_2048 0.72 +0.4 2,147,719 + HP15_2048 0.90 +0.1
Or see this region's nucleotide sequence