Strain Fitness in Marinobacter adhaerens HP15 around HP15_1544

Experiment: acetate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1542 and HP15_1543 overlap by 4 nucleotidesHP15_1543 and HP15_1544 are separated by 38 nucleotidesHP15_1544 and HP15_1545 are separated by 7 nucleotidesHP15_1545 and HP15_1546 are separated by 173 nucleotides HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588 _1542 HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334 _1543 HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843 _1544 HP15_1545: HP15_1545 - anti-sigma-28 factor, FlgM, at 1,628,851 to 1,629,177 _1545 HP15_1546: HP15_1546 - flagella basal body P-ring formation protein FlgA, at 1,629,351 to 1,630,019 _1546 Position (kb) 1628 1629Strain fitness (log2 ratio) -3 -2 -1 0 1at 1627.483 kb on - strand, within HP15_1542at 1627.499 kb on + strand, within HP15_1542at 1627.665 kb on + strand, within HP15_1543at 1627.684 kb on - strand, within HP15_1543at 1627.685 kb on - strand, within HP15_1543at 1627.740 kb on - strand, within HP15_1543at 1627.779 kb on - strand, within HP15_1543at 1627.808 kb on - strand, within HP15_1543at 1628.139 kb on + strand, within HP15_1543at 1628.242 kb on - strand, within HP15_1543at 1628.328 kb on - strandat 1628.395 kb on - strandat 1628.428 kb on - strand, within HP15_1544at 1628.562 kb on + strand, within HP15_1544at 1628.686 kb on + strand, within HP15_1544at 1628.694 kb on - strand, within HP15_1544at 1628.694 kb on - strand, within HP15_1544at 1628.727 kb on - strand, within HP15_1544at 1628.752 kb on - strand, within HP15_1544at 1628.785 kb on + strand, within HP15_1544at 1629.050 kb on + strand, within HP15_1545at 1629.134 kb on + strand, within HP15_1545at 1629.186 kb on - strandat 1629.692 kb on + strand, within HP15_1546at 1629.735 kb on + strand, within HP15_1546at 1629.841 kb on + strand, within HP15_1546

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate
remove
1,627,483 - HP15_1542 0.49 -0.0
1,627,499 + HP15_1542 0.57 +1.2
1,627,665 + HP15_1543 0.11 -1.3
1,627,684 - HP15_1543 0.13 +1.0
1,627,685 - HP15_1543 0.13 +1.6
1,627,740 - HP15_1543 0.21 -0.9
1,627,779 - HP15_1543 0.26 -0.6
1,627,808 - HP15_1543 0.30 -0.1
1,628,139 + HP15_1543 0.74 +1.1
1,628,242 - HP15_1543 0.88 +0.4
1,628,328 - -3.0
1,628,395 - +0.9
1,628,428 - HP15_1544 0.12 +0.7
1,628,562 + HP15_1544 0.40 +0.3
1,628,686 + HP15_1544 0.66 +0.9
1,628,694 - HP15_1544 0.68 +1.6
1,628,694 - HP15_1544 0.68 +1.1
1,628,727 - HP15_1544 0.75 +0.9
1,628,752 - HP15_1544 0.80 +1.2
1,628,785 + HP15_1544 0.87 +0.8
1,629,050 + HP15_1545 0.61 -0.4
1,629,134 + HP15_1545 0.87 +0.3
1,629,186 - +0.6
1,629,692 + HP15_1546 0.51 +0.9
1,629,735 + HP15_1546 0.57 +1.1
1,629,841 + HP15_1546 0.73 +0.9

Or see this region's nucleotide sequence