Experiment: acetate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1542 and HP15_1543 overlap by 4 nucleotides HP15_1543 and HP15_1544 are separated by 38 nucleotides HP15_1544 and HP15_1545 are separated by 7 nucleotides HP15_1545 and HP15_1546 are separated by 173 nucleotides
HP15_1542: HP15_1542 - hypothetical protein, at 1,627,382 to 1,627,588
_1542
HP15_1543: HP15_1543 - type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB, at 1,627,585 to 1,628,334
_1543
HP15_1544: HP15_1544 - flagella synthesis protein FlgN, at 1,628,373 to 1,628,843
_1544
HP15_1545: HP15_1545 - anti-sigma-28 factor, FlgM, at 1,628,851 to 1,629,177
_1545
HP15_1546: HP15_1546 - flagella basal body P-ring formation protein FlgA, at 1,629,351 to 1,630,019
_1546
Position (kb)
1628
1629 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1627.483 kb on - strand, within HP15_1542 at 1627.499 kb on + strand, within HP15_1542 at 1627.665 kb on + strand, within HP15_1543 at 1627.684 kb on - strand, within HP15_1543 at 1627.685 kb on - strand, within HP15_1543 at 1627.740 kb on - strand, within HP15_1543 at 1627.779 kb on - strand, within HP15_1543 at 1627.808 kb on - strand, within HP15_1543 at 1628.139 kb on + strand, within HP15_1543 at 1628.242 kb on - strand, within HP15_1543 at 1628.328 kb on - strand at 1628.395 kb on - strand at 1628.428 kb on - strand, within HP15_1544 at 1628.562 kb on + strand, within HP15_1544 at 1628.686 kb on + strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.694 kb on - strand, within HP15_1544 at 1628.727 kb on - strand, within HP15_1544 at 1628.752 kb on - strand, within HP15_1544 at 1628.785 kb on + strand, within HP15_1544 at 1629.050 kb on + strand, within HP15_1545 at 1629.134 kb on + strand, within HP15_1545 at 1629.186 kb on - strand at 1629.692 kb on + strand, within HP15_1546 at 1629.735 kb on + strand, within HP15_1546 at 1629.841 kb on + strand, within HP15_1546
Per-strain Table
Position Strand Gene LocusTag Fraction acetate remove 1,627,483 - HP15_1542 0.49 -0.0 1,627,499 + HP15_1542 0.57 +1.2 1,627,665 + HP15_1543 0.11 -1.3 1,627,684 - HP15_1543 0.13 +1.0 1,627,685 - HP15_1543 0.13 +1.6 1,627,740 - HP15_1543 0.21 -0.9 1,627,779 - HP15_1543 0.26 -0.6 1,627,808 - HP15_1543 0.30 -0.1 1,628,139 + HP15_1543 0.74 +1.1 1,628,242 - HP15_1543 0.88 +0.4 1,628,328 - -3.0 1,628,395 - +0.9 1,628,428 - HP15_1544 0.12 +0.7 1,628,562 + HP15_1544 0.40 +0.3 1,628,686 + HP15_1544 0.66 +0.9 1,628,694 - HP15_1544 0.68 +1.6 1,628,694 - HP15_1544 0.68 +1.1 1,628,727 - HP15_1544 0.75 +0.9 1,628,752 - HP15_1544 0.80 +1.2 1,628,785 + HP15_1544 0.87 +0.8 1,629,050 + HP15_1545 0.61 -0.4 1,629,134 + HP15_1545 0.87 +0.3 1,629,186 - +0.6 1,629,692 + HP15_1546 0.51 +0.9 1,629,735 + HP15_1546 0.57 +1.1 1,629,841 + HP15_1546 0.73 +0.9
Or see this region's nucleotide sequence