Strain Fitness in Shewanella amazonensis SB2B around Sama_3002

Experiment: D-Maltose

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Maltose
3,574,010	+		Sama_3000	0.47	-0.8
3,574,098	+		Sama_3000	0.56	+3.3
3,574,098	+		Sama_3000	0.56	-1.0
3,574,098	+		Sama_3000	0.56	-0.4
3,574,098	+		Sama_3000	0.56	-0.7
3,574,099	-		Sama_3000	0.56	+1.1
3,574,099	-		Sama_3000	0.56	+1.0
3,574,099	-		Sama_3000	0.56	-0.6
3,574,099	-		Sama_3000	0.56	-3.2
3,574,099	-		Sama_3000	0.56	+1.0
3,574,107	+		Sama_3000	0.57	-0.3
3,574,107	+		Sama_3000	0.57	+0.0
3,574,107	+		Sama_3000	0.57	-0.1
3,574,107	+		Sama_3000	0.57	+0.8
3,574,107	+		Sama_3000	0.57	-0.9
3,574,107	+		Sama_3000	0.57	-0.8
3,574,108	-		Sama_3000	0.57	-0.8
3,574,108	-		Sama_3000	0.57	-1.3
3,574,108	-		Sama_3000	0.57	+0.2
3,574,215	+		Sama_3000	0.68	-0.0
3,574,215	+		Sama_3000	0.68	+0.2
3,574,216	-		Sama_3000	0.68	-1.3
3,574,273	-		Sama_3000	0.74	-0.0
3,574,273	-		Sama_3000	0.74	-0.3
3,574,273	-		Sama_3000	0.74	-0.2
3,574,273	-		Sama_3000	0.74	+0.6
3,574,273	-		Sama_3000	0.74	-0.3
3,574,273	-		Sama_3000	0.74	-1.7
3,574,275	+		Sama_3000	0.74	+0.4
3,574,275	+		Sama_3000	0.74	+0.4
3,574,275	+		Sama_3000	0.74	+0.3
3,574,275	+		Sama_3000	0.74	+0.6
3,574,275	+		Sama_3000	0.74	+0.2
3,574,275	+		Sama_3000	0.74	+0.2
3,574,276	-		Sama_3000	0.74	-0.9
3,574,276	-		Sama_3000	0.74	-0.6
3,574,276	-		Sama_3000	0.74	-1.5
3,574,276	-		Sama_3000	0.74	-0.3
3,574,276	-		Sama_3000	0.74	-1.8
3,574,276	-		Sama_3000	0.74	-0.7
3,574,276	-		Sama_3000	0.74	+0.1
3,574,276	-		Sama_3000	0.74	+0.6
3,574,276	-		Sama_3000	0.74	+0.3
3,574,310	+		Sama_3000	0.78	-1.9
3,574,310	+		Sama_3000	0.78	+0.1
3,574,310	+		Sama_3000	0.78	+0.7
3,574,310	+		Sama_3000	0.78	-0.5
3,574,310	+		Sama_3000	0.78	+1.1
3,574,310	+		Sama_3000	0.78	-0.0
3,574,310	+		Sama_3000	0.78	+1.3
3,574,310	+		Sama_3000	0.78	+0.8
3,574,310	+		Sama_3000	0.78	-0.4
3,574,310	+		Sama_3000	0.78	-0.5
3,574,311	-		Sama_3000	0.78	-1.3
3,574,311	-		Sama_3000	0.78	-1.3
3,574,330	+		Sama_3000	0.80	-2.0
3,574,330	+		Sama_3000	0.80	+0.5
3,574,355	+		Sama_3000	0.82	+0.8
3,574,355	+		Sama_3000	0.82	-1.0
3,574,355	+		Sama_3000	0.82	+1.1
3,574,356	-		Sama_3000	0.82	+0.2
3,574,407	+		Sama_3000	0.87	-0.3
3,574,407	+		Sama_3000	0.87	+1.5
3,574,408	-		Sama_3000	0.88	+1.4
3,574,443	-				+1.0
3,574,490	+				+1.1
3,574,490	+				+0.7
3,574,491	-				-0.1
3,574,527	+				+1.2
3,574,528	-				-0.0
3,574,528	-				+0.0
3,574,551	+				+0.9
3,574,552	-				+1.4
3,574,561	+				-0.0
3,574,562	-				+1.2
3,574,589	+		Sama_3001	0.20	+2.1
3,574,590	-		Sama_3001	0.20	-0.3
3,574,590	-		Sama_3001	0.20	+0.4
3,574,590	-		Sama_3001	0.20	+1.1
3,574,605	+		Sama_3001	0.26	+1.8
3,574,605	+		Sama_3001	0.26	+2.9
3,574,606	-		Sama_3001	0.27	-1.3
3,574,693	+		Sama_3001	0.61	+0.8
3,574,693	+		Sama_3001	0.61	+0.6
3,574,694	-		Sama_3001	0.62	-0.7
3,574,720	-		Sama_3001	0.72	-0.3
3,574,754	+		Sama_3001	0.85	+0.7
3,574,755	-		Sama_3001	0.86	+1.3
3,574,799	+				+1.8
3,574,800	-				-0.0
3,574,825	+				+1.4
3,574,825	+				+0.9
3,574,826	-				-2.0
3,574,826	-				-0.8
3,574,826	-				-0.2
3,574,827	+				+0.7
3,574,827	+				-0.0
3,574,827	+				+0.2
3,574,827	+				+1.1
3,574,828	-				+0.6
3,574,828	-				+0.5
3,574,828	-				-0.6
3,574,831	+				+1.6
3,574,831	+				+1.2
3,574,832	-				-2.9
3,574,892	+				-1.1
3,574,893	-				-1.9
3,574,960	+				-1.8
3,574,960	+				-1.5
3,574,961	-				-1.9
3,574,961	-				-0.8
3,574,979	-		Sama_3002	0.11	-0.6
3,574,991	+		Sama_3002	0.12	-0.3
3,574,991	+		Sama_3002	0.12	-2.9
3,574,991	+		Sama_3002	0.12	-1.3
3,574,991	+		Sama_3002	0.12	+0.4
3,574,992	-		Sama_3002	0.13	-0.4
3,575,019	-		Sama_3002	0.16	-2.1
3,575,082	-		Sama_3002	0.23	+0.2
3,575,082	-		Sama_3002	0.23	-2.2
3,575,135	+		Sama_3002	0.29	-2.3
3,575,136	-		Sama_3002	0.29	-0.6
3,575,136	-		Sama_3002	0.29	-2.5
3,575,169	-		Sama_3002	0.33	+0.2
3,575,264	+		Sama_3002	0.43	-1.6
3,575,264	+		Sama_3002	0.43	-1.6
3,575,289	+		Sama_3002	0.46	-1.0
3,575,307	+		Sama_3002	0.48	-0.9
3,575,447	+		Sama_3002	0.64	-1.8
3,575,447	+		Sama_3002	0.64	-2.8
3,575,447	+		Sama_3002	0.64	-3.5
3,575,447	+		Sama_3002	0.64	-0.4
3,575,447	+		Sama_3002	0.64	-1.6
3,575,447	+		Sama_3002	0.64	-1.8
3,575,447	+		Sama_3002	0.64	-0.4
3,575,448	-		Sama_3002	0.64	-2.2
3,575,448	-		Sama_3002	0.64	-0.4
3,575,448	-		Sama_3002	0.64	-0.5
3,575,448	-		Sama_3002	0.64	-1.9
3,575,448	-		Sama_3002	0.64	-1.6
3,575,448	-		Sama_3002	0.64	-2.0
3,575,448	-		Sama_3002	0.64	+0.2
3,575,448	-		Sama_3002	0.64	-2.2
3,575,448	-		Sama_3002	0.64	-1.3
3,575,448	-		Sama_3002	0.64	-1.5
3,575,448	-		Sama_3002	0.64	-2.3
3,575,448	-		Sama_3002	0.64	-2.9
3,575,448	-		Sama_3002	0.64	+0.6
3,575,458	+		Sama_3002	0.65	-3.4
3,575,458	+		Sama_3002	0.65	-0.3
3,575,458	+		Sama_3002	0.65	-0.8
3,575,458	+		Sama_3002	0.65	-3.1
3,575,458	+		Sama_3002	0.65	+0.5
3,575,459	-		Sama_3002	0.65	-0.8
3,575,459	-		Sama_3002	0.65	-3.0
3,575,459	-		Sama_3002	0.65	-1.8
3,575,459	-		Sama_3002	0.65	-0.4
3,575,515	+		Sama_3002	0.72	-1.0
3,575,515	+		Sama_3002	0.72	-1.5
3,575,515	+		Sama_3002	0.72	-0.4
3,575,516	-		Sama_3002	0.72	-1.6
3,575,516	-		Sama_3002	0.72	-2.9
3,575,590	+		Sama_3002	0.80	-2.1
3,575,612	+		Sama_3002	0.82	-1.6
3,575,612	+		Sama_3002	0.82	-0.8
3,575,613	-		Sama_3002	0.83	-3.6
3,575,613	-		Sama_3002	0.83	-2.6
3,575,613	-		Sama_3002	0.83	-2.3
3,575,638	+		Sama_3002	0.85	-1.7
3,575,638	+		Sama_3002	0.85	-2.2
3,575,638	+		Sama_3002	0.85	-3.1
3,575,638	+		Sama_3002	0.85	-1.6
3,575,638	+		Sama_3002	0.85	+0.5
3,575,638	+		Sama_3002	0.85	-0.8
3,575,639	-		Sama_3002	0.85	-1.8
3,575,639	-		Sama_3002	0.85	-0.7
3,575,639	-		Sama_3002	0.85	-3.4
3,575,639	-		Sama_3002	0.85	-0.8
3,575,639	-		Sama_3002	0.85	-2.3
3,575,639	-		Sama_3002	0.85	-4.0
3,575,647	+		Sama_3002	0.86	-1.6
3,575,648	-		Sama_3002	0.86	-2.4
3,575,648	-		Sama_3002	0.86	-2.8
3,575,648	-		Sama_3002	0.86	-1.8
3,575,698	+				+0.3
3,575,713	+				+1.2
3,575,758	+				-0.5
3,575,758	+				-0.9
3,575,759	-				-0.6
3,575,759	-				-1.0
3,575,817	+				+0.9
3,575,818	-				+0.6
3,575,820	+				-0.2
3,575,820	+				-0.3
3,575,821	-				+1.1
3,575,821	-				-0.2
3,575,821	-				-1.6
3,575,834	+				-0.4
3,575,834	+				+0.7
3,575,835	-				-0.0
3,575,866	+				-0.7
3,575,867	-				-1.1
3,575,867	-				-0.5
3,575,872	+				+0.1
3,575,872	+				-0.3
3,575,882	-				+0.2
3,575,882	-				-1.3
3,575,882	-				-0.3
3,575,882	-				-0.2
3,575,929	+				+0.4
3,575,929	+				+0.1
3,575,929	+				-0.3
3,575,930	-				-0.2
3,575,930	-				+0.1
3,575,944	-				-0.0
3,575,978	+				-0.8
3,575,979	-				-0.3
3,576,008	-				+1.4
3,576,008	-				-0.6
3,576,042	+				-0.0
3,576,042	+				+0.4
3,576,042	+				+1.0
3,576,042	+				-0.8
3,576,043	-				-0.9
3,576,043	-				-0.6
3,576,043	-				+0.8
3,576,043	-				+0.2
3,576,081	+				-0.5
3,576,099	+				+2.7
3,576,099	+				+0.7
3,576,099	+				-1.1
3,576,100	-				+0.5
3,576,100	-				+0.8
3,576,438	+		Sama_3003	0.50	+1.9
3,576,438	+		Sama_3003	0.50	-0.2
3,576,438	+		Sama_3003	0.50	+0.5
3,576,439	-		Sama_3003	0.50	-0.5
3,576,439	-		Sama_3003	0.50	-0.7
3,576,439	-		Sama_3003	0.50	-1.3
3,576,439	-		Sama_3003	0.50	-0.3
3,576,439	-		Sama_3003	0.50	-1.3
3,576,442	+		Sama_3003	0.50	+3.1
3,576,442	+		Sama_3003	0.50	-0.3
3,576,495	+		Sama_3003	0.57	+0.4
3,576,495	+		Sama_3003	0.57	+0.7
3,576,496	-		Sama_3003	0.57	-0.4
3,576,496	-		Sama_3003	0.57	-0.0
3,576,496	-		Sama_3003	0.57	-0.3
3,576,496	-		Sama_3003	0.57	+0.1
3,576,640	-		Sama_3003	0.76	-0.0
3,576,654	+		Sama_3003	0.77	-0.6
3,576,654	+		Sama_3003	0.77	+0.4
3,576,654	+		Sama_3003	0.77	-0.8
3,576,654	+		Sama_3003	0.77	+1.0
3,576,654	+		Sama_3003	0.77	-0.8
3,576,654	+		Sama_3003	0.77	-1.0
3,576,654	+		Sama_3003	0.77	-1.0
3,576,654	+		Sama_3003	0.77	-0.5
3,576,654	+		Sama_3003	0.77	+0.1
3,576,654	+		Sama_3003	0.77	-1.5
3,576,654	+		Sama_3003	0.77	+1.4
3,576,654	+		Sama_3003	0.77	+1.5
3,576,654	+		Sama_3003	0.77	+0.4
3,576,655	-		Sama_3003	0.77	-0.4
3,576,655	-		Sama_3003	0.77	+0.4
3,576,655	-		Sama_3003	0.77	+1.7
3,576,655	-		Sama_3003	0.77	+0.5
3,576,655	-		Sama_3003	0.77	-1.0
3,576,655	-		Sama_3003	0.77	+0.2
3,576,655	-		Sama_3003	0.77	+0.3
3,576,655	-		Sama_3003	0.77	+0.4
3,576,655	-		Sama_3003	0.77	-0.4
3,576,655	-		Sama_3003	0.77	+0.4
3,576,655	-		Sama_3003	0.77	-0.0
3,576,655	-		Sama_3003	0.77	+0.3
3,576,724	+		Sama_3003	0.86	-1.8
3,576,724	+		Sama_3003	0.86	+0.2
3,576,724	+		Sama_3003	0.86	-1.5
3,576,725	-		Sama_3003	0.86	-0.5
3,576,725	-		Sama_3003	0.86	-0.0
3,576,725	-		Sama_3003	0.86	-0.3