Experiment: D-Maltose
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0747 and Sama_0748 overlap by 4 nucleotides Sama_0748 and Sama_0749 are separated by 80 nucleotides Sama_0749 and Sama_0750 are separated by 155 nucleotides
Sama_0747: Sama_0747 - signal transduction histidine kinase-like protein (RefSeq), at 919,576 to 923,439
_0747
Sama_0748: Sama_0748 - response regulator receiver protein (RefSeq), at 923,436 to 924,374
_0748
Sama_0749: Sama_0749 - hypothetical protein (RefSeq), at 924,455 to 924,718
_0749
Sama_0750: Sama_0750 - catalase-like protein (RefSeq), at 924,874 to 925,872
_0750
Position (kb) 923
924
925 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 922.523 kb on - strand, within Sama_0747 at 922.554 kb on + strand, within Sama_0747 at 922.554 kb on + strand, within Sama_0747 at 922.554 kb on + strand, within Sama_0747 at 922.554 kb on + strand, within Sama_0747 at 922.555 kb on - strand, within Sama_0747 at 922.572 kb on + strand, within Sama_0747 at 922.572 kb on + strand, within Sama_0747 at 922.645 kb on - strand, within Sama_0747 at 922.645 kb on - strand, within Sama_0747 at 922.681 kb on - strand, within Sama_0747 at 922.685 kb on + strand, within Sama_0747 at 922.685 kb on + strand, within Sama_0747 at 922.686 kb on - strand, within Sama_0747 at 922.686 kb on - strand, within Sama_0747 at 922.694 kb on - strand, within Sama_0747 at 922.806 kb on + strand, within Sama_0747 at 922.806 kb on + strand, within Sama_0747 at 922.806 kb on + strand, within Sama_0747 at 922.807 kb on - strand, within Sama_0747 at 922.807 kb on - strand, within Sama_0747 at 922.909 kb on - strand, within Sama_0747 at 922.909 kb on - strand, within Sama_0747 at 922.938 kb on + strand, within Sama_0747 at 922.938 kb on + strand, within Sama_0747 at 922.939 kb on - strand, within Sama_0747 at 922.940 kb on + strand, within Sama_0747 at 922.940 kb on + strand, within Sama_0747 at 922.940 kb on + strand, within Sama_0747 at 922.941 kb on - strand, within Sama_0747 at 922.941 kb on - strand, within Sama_0747 at 922.976 kb on + strand, within Sama_0747 at 922.976 kb on + strand, within Sama_0747 at 922.976 kb on + strand, within Sama_0747 at 922.976 kb on + strand, within Sama_0747 at 922.977 kb on - strand, within Sama_0747 at 922.977 kb on - strand, within Sama_0747 at 923.003 kb on - strand, within Sama_0747 at 923.013 kb on + strand, within Sama_0747 at 923.013 kb on + strand, within Sama_0747 at 923.145 kb on + strand at 923.146 kb on - strand at 923.146 kb on - strand at 923.165 kb on + strand at 923.165 kb on + strand at 923.166 kb on - strand at 923.166 kb on - strand at 923.166 kb on - strand at 923.249 kb on + strand at 923.249 kb on + strand at 923.249 kb on + strand at 923.249 kb on + strand at 923.249 kb on + strand at 923.250 kb on - strand at 923.250 kb on - strand at 923.250 kb on - strand at 923.250 kb on - strand at 923.254 kb on - strand at 923.358 kb on - strand at 923.402 kb on + strand at 923.402 kb on + strand at 923.403 kb on - strand at 923.432 kb on + strand at 923.432 kb on + strand at 923.432 kb on + strand at 923.440 kb on + strand at 923.440 kb on + strand at 923.440 kb on + strand at 923.441 kb on - strand at 923.441 kb on - strand at 923.459 kb on + strand at 923.459 kb on + strand at 923.460 kb on - strand at 923.460 kb on - strand at 923.504 kb on + strand at 923.505 kb on - strand at 923.524 kb on + strand at 923.525 kb on - strand at 923.593 kb on + strand, within Sama_0748 at 923.593 kb on + strand, within Sama_0748 at 923.593 kb on + strand, within Sama_0748 at 923.594 kb on - strand, within Sama_0748 at 923.594 kb on - strand, within Sama_0748 at 923.697 kb on - strand, within Sama_0748 at 923.777 kb on + strand, within Sama_0748 at 923.777 kb on + strand, within Sama_0748 at 923.777 kb on + strand, within Sama_0748 at 923.783 kb on + strand, within Sama_0748 at 923.783 kb on + strand, within Sama_0748 at 923.784 kb on - strand, within Sama_0748 at 923.792 kb on + strand, within Sama_0748 at 923.798 kb on + strand, within Sama_0748 at 923.854 kb on + strand, within Sama_0748 at 923.854 kb on + strand, within Sama_0748 at 923.854 kb on + strand, within Sama_0748 at 923.854 kb on + strand, within Sama_0748 at 923.855 kb on - strand, within Sama_0748 at 923.855 kb on - strand, within Sama_0748 at 923.855 kb on - strand, within Sama_0748 at 923.855 kb on - strand, within Sama_0748 at 923.919 kb on + strand, within Sama_0748 at 923.919 kb on + strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.920 kb on - strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.963 kb on + strand, within Sama_0748 at 923.964 kb on - strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 923.991 kb on + strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.004 kb on - strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.105 kb on + strand, within Sama_0748 at 924.106 kb on - strand, within Sama_0748 at 924.273 kb on + strand, within Sama_0748 at 924.308 kb on + strand at 924.313 kb on + strand at 924.313 kb on + strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.314 kb on - strand at 924.318 kb on + strand at 924.318 kb on + strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.319 kb on - strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.353 kb on + strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.354 kb on - strand at 924.383 kb on - strand at 924.457 kb on - strand at 924.538 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.598 kb on + strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.599 kb on - strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.665 kb on + strand, within Sama_0749 at 924.666 kb on - strand, within Sama_0749 at 924.706 kb on + strand at 924.764 kb on - strand at 924.820 kb on - strand at 924.820 kb on - strand at 924.875 kb on + strand at 924.875 kb on + strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.876 kb on - strand at 924.888 kb on + strand at 924.902 kb on + strand at 924.926 kb on - strand at 924.945 kb on + strand at 924.961 kb on + strand at 924.961 kb on + strand at 925.030 kb on + strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.031 kb on - strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.092 kb on + strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.093 kb on - strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.095 kb on + strand, within Sama_0750 at 925.096 kb on - strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.121 kb on + strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.122 kb on - strand, within Sama_0750 at 925.152 kb on + strand, within Sama_0750 at 925.153 kb on - strand, within Sama_0750 at 925.210 kb on - strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.298 kb on + strand, within Sama_0750 at 925.299 kb on - strand, within Sama_0750 at 925.309 kb on + strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.310 kb on - strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.364 kb on + strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750 at 925.365 kb on - strand, within Sama_0750
Per-strain Table
Position Strand Gene LocusTag Fraction D-Maltose remove 922,523 - Sama_0747 0.76 -0.1 922,554 + Sama_0747 0.77 +0.1 922,554 + Sama_0747 0.77 +0.2 922,554 + Sama_0747 0.77 +0.8 922,554 + Sama_0747 0.77 +0.9 922,555 - Sama_0747 0.77 +0.7 922,572 + Sama_0747 0.78 +0.7 922,572 + Sama_0747 0.78 -0.1 922,645 - Sama_0747 0.79 +1.8 922,645 - Sama_0747 0.79 +0.1 922,681 - Sama_0747 0.80 +0.3 922,685 + Sama_0747 0.80 -0.4 922,685 + Sama_0747 0.80 +0.1 922,686 - Sama_0747 0.80 +0.3 922,686 - Sama_0747 0.80 +0.4 922,694 - Sama_0747 0.81 +0.5 922,806 + Sama_0747 0.84 -0.4 922,806 + Sama_0747 0.84 +0.3 922,806 + Sama_0747 0.84 +0.7 922,807 - Sama_0747 0.84 -1.7 922,807 - Sama_0747 0.84 -2.1 922,909 - Sama_0747 0.86 -0.7 922,909 - Sama_0747 0.86 -0.2 922,938 + Sama_0747 0.87 -0.3 922,938 + Sama_0747 0.87 +1.4 922,939 - Sama_0747 0.87 +0.5 922,940 + Sama_0747 0.87 +0.9 922,940 + Sama_0747 0.87 +0.2 922,940 + Sama_0747 0.87 +0.3 922,941 - Sama_0747 0.87 -0.5 922,941 - Sama_0747 0.87 -0.1 922,976 + Sama_0747 0.88 +0.6 922,976 + Sama_0747 0.88 -0.1 922,976 + Sama_0747 0.88 -0.5 922,976 + Sama_0747 0.88 +1.0 922,977 - Sama_0747 0.88 -0.5 922,977 - Sama_0747 0.88 +0.4 923,003 - Sama_0747 0.89 +0.9 923,013 + Sama_0747 0.89 +0.1 923,013 + Sama_0747 0.89 -1.9 923,145 + -0.0 923,146 - +0.9 923,146 - -0.4 923,165 + -0.4 923,165 + +0.9 923,166 - +1.5 923,166 - +0.1 923,166 - +0.5 923,249 + -1.1 923,249 + -1.5 923,249 + -0.8 923,249 + +0.6 923,249 + +1.6 923,250 - +0.9 923,250 - -0.7 923,250 - -0.2 923,250 - -0.0 923,254 - +0.0 923,358 - -0.4 923,402 + +0.1 923,402 + +0.6 923,403 - -0.4 923,432 + +0.3 923,432 + -0.1 923,432 + -0.3 923,440 + -1.1 923,440 + -0.1 923,440 + -0.1 923,441 - +1.0 923,441 - +0.7 923,459 + +1.2 923,459 + -0.3 923,460 - +0.5 923,460 - +0.6 923,504 + +0.7 923,505 - +0.4 923,524 + -0.2 923,525 - -0.7 923,593 + Sama_0748 0.17 -1.7 923,593 + Sama_0748 0.17 -0.4 923,593 + Sama_0748 0.17 -0.4 923,594 - Sama_0748 0.17 -0.3 923,594 - Sama_0748 0.17 +1.0 923,697 - Sama_0748 0.28 +0.5 923,777 + Sama_0748 0.36 +0.1 923,777 + Sama_0748 0.36 -0.5 923,777 + Sama_0748 0.36 -2.5 923,783 + Sama_0748 0.37 +0.5 923,783 + Sama_0748 0.37 +0.9 923,784 - Sama_0748 0.37 +0.4 923,792 + Sama_0748 0.38 +0.4 923,798 + Sama_0748 0.39 +0.3 923,854 + Sama_0748 0.45 +0.7 923,854 + Sama_0748 0.45 -0.2 923,854 + Sama_0748 0.45 -0.1 923,854 + Sama_0748 0.45 +0.0 923,855 - Sama_0748 0.45 -0.4 923,855 - Sama_0748 0.45 +2.7 923,855 - Sama_0748 0.45 +1.4 923,855 - Sama_0748 0.45 +0.5 923,919 + Sama_0748 0.51 +0.5 923,919 + Sama_0748 0.51 -0.0 923,920 - Sama_0748 0.52 -0.5 923,920 - Sama_0748 0.52 +0.5 923,963 + Sama_0748 0.56 +0.6 923,963 + Sama_0748 0.56 -0.7 923,963 + Sama_0748 0.56 -0.0 923,964 - Sama_0748 0.56 -0.3 923,991 + Sama_0748 0.59 -0.4 923,991 + Sama_0748 0.59 +2.0 923,991 + Sama_0748 0.59 -0.1 924,004 - Sama_0748 0.60 +0.2 924,004 - Sama_0748 0.60 +0.2 924,004 - Sama_0748 0.60 +1.0 924,004 - Sama_0748 0.60 +0.9 924,105 + Sama_0748 0.71 -0.1 924,105 + Sama_0748 0.71 +0.6 924,106 - Sama_0748 0.71 +1.2 924,273 + Sama_0748 0.89 +1.5 924,308 + +1.2 924,313 + +1.0 924,313 + -0.5 924,314 - -0.5 924,314 - -0.5 924,314 - -0.2 924,318 + +0.2 924,318 + +0.5 924,319 - +0.9 924,319 - -0.0 924,319 - +0.5 924,319 - -0.5 924,319 - +0.5 924,319 - +0.3 924,353 + +0.7 924,353 + -0.6 924,353 + +1.5 924,353 + +0.3 924,353 + +1.5 924,353 + -1.5 924,353 + +0.1 924,353 + -0.3 924,353 + -0.5 924,353 + -0.5 924,353 + +0.8 924,353 + +0.4 924,353 + -0.4 924,353 + -0.1 924,353 + -2.0 924,353 + +1.1 924,353 + +1.4 924,353 + -0.3 924,354 - +0.2 924,354 - +0.9 924,354 - +0.7 924,354 - +0.3 924,354 - -0.7 924,354 - +0.4 924,354 - +0.2 924,354 - +0.6 924,354 - +0.0 924,354 - +1.5 924,354 - +0.2 924,354 - +0.1 924,383 - -0.5 924,457 - +0.5 924,538 + Sama_0749 0.31 -0.2 924,598 + Sama_0749 0.54 -0.4 924,598 + Sama_0749 0.54 -0.7 924,598 + Sama_0749 0.54 -0.4 924,599 - Sama_0749 0.55 -2.3 924,599 - Sama_0749 0.55 -3.5 924,599 - Sama_0749 0.55 -0.9 924,599 - Sama_0749 0.55 -0.7 924,665 + Sama_0749 0.80 +0.2 924,665 + Sama_0749 0.80 +1.2 924,665 + Sama_0749 0.80 -1.0 924,665 + Sama_0749 0.80 +1.2 924,666 - Sama_0749 0.80 -0.8 924,706 + -0.2 924,764 - -0.1 924,820 - -1.7 924,820 - -0.4 924,875 + -0.3 924,875 + -0.2 924,876 - -0.6 924,876 - +0.4 924,876 - -0.4 924,876 - +0.7 924,888 + +0.5 924,902 + -1.8 924,926 - -0.1 924,945 + -0.3 924,961 + -0.4 924,961 + -1.1 925,030 + Sama_0750 0.16 -0.3 925,031 - Sama_0750 0.16 -1.0 925,031 - Sama_0750 0.16 -0.0 925,031 - Sama_0750 0.16 -2.5 925,092 + Sama_0750 0.22 +0.1 925,092 + Sama_0750 0.22 +1.9 925,092 + Sama_0750 0.22 +0.3 925,093 - Sama_0750 0.22 +1.1 925,093 - Sama_0750 0.22 +1.2 925,095 + Sama_0750 0.22 -1.1 925,095 + Sama_0750 0.22 -1.7 925,096 - Sama_0750 0.22 +0.5 925,121 + Sama_0750 0.25 -0.1 925,121 + Sama_0750 0.25 +0.4 925,122 - Sama_0750 0.25 -1.6 925,122 - Sama_0750 0.25 -1.6 925,152 + Sama_0750 0.28 -0.2 925,153 - Sama_0750 0.28 -0.1 925,210 - Sama_0750 0.34 +0.0 925,298 + Sama_0750 0.42 +1.2 925,298 + Sama_0750 0.42 -0.6 925,298 + Sama_0750 0.42 +0.7 925,299 - Sama_0750 0.43 +0.7 925,309 + Sama_0750 0.44 +0.4 925,310 - Sama_0750 0.44 -2.5 925,310 - Sama_0750 0.44 +0.6 925,364 + Sama_0750 0.49 +0.3 925,364 + Sama_0750 0.49 +0.1 925,364 + Sama_0750 0.49 +2.5 925,365 - Sama_0750 0.49 -1.1 925,365 - Sama_0750 0.49 -0.5 925,365 - Sama_0750 0.49 -0.9 925,365 - Sama_0750 0.49 -0.9 925,365 - Sama_0750 0.49 -1.1
Or see this region's nucleotide sequence