Strain Fitness in Shewanella loihica PV-4 around Shew_3739

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3738 and trkA are separated by 9 nucleotidestrkA and Shew_3740 are separated by 30 nucleotides Shew_3738: Shew_3738 - sun protein (RefSeq), at 4,451,122 to 4,452,405 _3738 Shew_3739: trkA - potassium transporter peripheral membrane component (RefSeq), at 4,452,415 to 4,453,824 trkA Shew_3740: Shew_3740 - TrkH family potassium uptake protein (RefSeq), at 4,453,855 to 4,455,297 _3740 Position (kb) 4452 4453 4454Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4451.457 kb on + strand, within Shew_3738at 4451.465 kb on - strand, within Shew_3738at 4451.466 kb on + strand, within Shew_3738at 4451.466 kb on + strand, within Shew_3738at 4451.472 kb on - strand, within Shew_3738at 4451.565 kb on + strand, within Shew_3738at 4451.588 kb on + strand, within Shew_3738at 4451.734 kb on + strand, within Shew_3738at 4451.794 kb on + strand, within Shew_3738at 4451.794 kb on + strand, within Shew_3738at 4451.802 kb on - strand, within Shew_3738at 4453.944 kb on + strandat 4453.944 kb on + strandat 4453.952 kb on - strandat 4454.110 kb on + strand, within Shew_3740at 4454.230 kb on + strand, within Shew_3740at 4454.238 kb on - strand, within Shew_3740at 4454.382 kb on + strand, within Shew_3740at 4454.390 kb on - strand, within Shew_3740at 4454.390 kb on - strand, within Shew_3740at 4454.658 kb on + strand, within Shew_3740at 4454.666 kb on - strand, within Shew_3740

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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4,451,457 + Shew_3738 0.26 -1.2
4,451,465 - Shew_3738 0.27 -1.1
4,451,466 + Shew_3738 0.27 -0.8
4,451,466 + Shew_3738 0.27 -0.3
4,451,472 - Shew_3738 0.27 -2.0
4,451,565 + Shew_3738 0.35 -1.2
4,451,588 + Shew_3738 0.36 -0.0
4,451,734 + Shew_3738 0.48 -0.4
4,451,794 + Shew_3738 0.52 -0.8
4,451,794 + Shew_3738 0.52 -0.6
4,451,802 - Shew_3738 0.53 -0.9
4,453,944 + +2.8
4,453,944 + -0.2
4,453,952 - -0.9
4,454,110 + Shew_3740 0.18 -0.8
4,454,230 + Shew_3740 0.26 -0.3
4,454,238 - Shew_3740 0.27 -0.4
4,454,382 + Shew_3740 0.37 +0.5
4,454,390 - Shew_3740 0.37 -0.9
4,454,390 - Shew_3740 0.37 -0.2
4,454,658 + Shew_3740 0.56 -0.6
4,454,666 - Shew_3740 0.56 -2.1

Or see this region's nucleotide sequence