Strain Fitness in Shewanella loihica PV-4 around Shew_3431

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
4,095,353	+		Shew_3430	0.74	+4.5
4,095,487	-		Shew_3430	0.80	+4.2
4,096,068	+				+3.6
4,096,070	+				+4.0
4,096,365	+	aceE	Shew_3431	0.18	+2.8
4,096,365	+	aceE	Shew_3431	0.18	+3.5
4,096,371	+	aceE	Shew_3431	0.18	+3.6
4,096,373	-	aceE	Shew_3431	0.18	+3.4
4,096,557	+	aceE	Shew_3431	0.25	+4.0
4,096,575	-	aceE	Shew_3431	0.26	+3.4
4,096,625	+	aceE	Shew_3431	0.28	+3.5
4,096,656	-	aceE	Shew_3431	0.29	+3.3
4,096,866	-	aceE	Shew_3431	0.37	+3.4
4,096,885	-	aceE	Shew_3431	0.38	+3.4
4,096,957	-	aceE	Shew_3431	0.40	+3.9
4,097,161	+	aceE	Shew_3431	0.48	+4.1
4,097,209	-	aceE	Shew_3431	0.50	+2.9
4,097,389	+	aceE	Shew_3431	0.57	+3.6
4,097,389	+	aceE	Shew_3431	0.57	+4.4
4,097,444	-	aceE	Shew_3431	0.59	+2.8
4,097,549	+	aceE	Shew_3431	0.63	+3.3
4,097,562	+	aceE	Shew_3431	0.63	+3.5
4,097,892	-	aceE	Shew_3431	0.75	+3.5
4,097,997	+	aceE	Shew_3431	0.79	+4.2
4,098,011	-	aceE	Shew_3431	0.80	+3.3
4,098,643	+				+3.4
4,098,646	-				+1.4
4,098,953	+	pdhR	Shew_3432	0.45	+3.6
4,099,029	+	pdhR	Shew_3432	0.55	+3.3
4,099,185	-	pdhR	Shew_3432	0.75	+3.9
4,099,515	+				+0.2