Strain Fitness in Shewanella loihica PV-4 around Shew_3259

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
3,895,664	+				+0.4
3,895,668	+				-0.1
3,895,762	+				+0.1
3,895,770	-				-1.4
3,895,777	-				-1.3
3,896,019	+		Shew_3258	0.38	+0.0
3,896,029	+		Shew_3258	0.40	+0.0
3,896,075	-		Shew_3258	0.46	+0.1
3,896,155	-		Shew_3258	0.57	-0.1
3,896,161	+		Shew_3258	0.58	+0.5
3,896,161	+		Shew_3258	0.58	+0.9
3,896,161	+		Shew_3258	0.58	+0.1
3,896,169	-		Shew_3258	0.59	-0.0
3,896,169	-		Shew_3258	0.59	-0.3
3,896,217	-		Shew_3258	0.66	+0.2
3,896,279	+		Shew_3258	0.75	-0.2
3,896,534	+				+0.1
3,896,576	-				-1.4
3,896,630	+		Shew_3259	0.12	-0.9
3,896,657	-		Shew_3259	0.14	-1.5
3,896,879	-		Shew_3259	0.30	-0.7
3,897,218	+		Shew_3259	0.54	-0.5
3,897,253	+		Shew_3259	0.57	+0.7
3,897,452	+		Shew_3259	0.71	+0.2
3,897,460	+		Shew_3259	0.72	-0.8
3,897,560	-		Shew_3259	0.79	+0.1
3,897,657	+		Shew_3259	0.86	-3.0
3,897,662	+		Shew_3259	0.86	-1.2
3,897,670	-		Shew_3259	0.87	-0.7
3,897,670	-		Shew_3259	0.87	+0.0
3,897,670	-		Shew_3259	0.87	+0.3
3,897,670	-		Shew_3259	0.87	-1.5
3,897,737	+				+0.2
3,897,742	+				+0.5
3,897,750	-				-0.4
3,897,750	-				-0.0
3,897,750	-				-0.2
3,897,751	-				-1.0
3,897,911	-				+0.6
3,898,429	+				+0.8
3,898,509	+		Shew_3260	0.12	-1.9
3,898,517	-		Shew_3260	0.13	+0.3
3,898,517	-		Shew_3260	0.13	+0.2
3,898,517	-		Shew_3260	0.13	+0.7
3,898,543	+		Shew_3260	0.15	+0.8
3,898,713	-		Shew_3260	0.32	+0.7