Strain Fitness in Shewanella loihica PV-4 around Shew_2447

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2445 and Shew_2446 are separated by 126 nucleotidesShew_2446 and Shew_2447 are separated by 234 nucleotidesShew_2447 and nrdG are separated by 158 nucleotidesnrdG and Shew_2449 are separated by 121 nucleotides Shew_2445: Shew_2445 - hypothetical protein (RefSeq), at 2,875,132 to 2,875,608 _2445 Shew_2446: Shew_2446 - GTP cyclohydrolase II (RefSeq), at 2,875,735 to 2,876,352 _2446 Shew_2447: Shew_2447 - hypothetical protein (RefSeq), at 2,876,587 to 2,876,943 _2447 Shew_2448: nrdG - anaerobic ribonucleotide reductase-activating protein (RefSeq), at 2,877,102 to 2,877,575 nrdG Shew_2449: Shew_2449 - anaerobic ribonucleoside triphosphate reductase (RefSeq), at 2,877,697 to 2,879,814 _2449 Position (kb) 2876 2877Strain fitness (log2 ratio) -1 0 1at 2876.623 kb on - strand, within Shew_2447at 2876.719 kb on + strand, within Shew_2447at 2876.722 kb on - strand, within Shew_2447at 2876.739 kb on - strand, within Shew_2447at 2876.752 kb on - strand, within Shew_2447at 2877.294 kb on - strand, within nrdGat 2877.690 kb on - strandat 2877.783 kb on + strandat 2877.810 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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2,876,623 - Shew_2447 0.10 +0.3
2,876,719 + Shew_2447 0.37 +0.3
2,876,722 - Shew_2447 0.38 +0.9
2,876,739 - Shew_2447 0.43 +0.1
2,876,752 - Shew_2447 0.46 -0.1
2,877,294 - nrdG Shew_2448 0.41 +0.1
2,877,690 - +0.2
2,877,783 + +0.6
2,877,810 + +0.6

Or see this region's nucleotide sequence