Strain Fitness in Shewanella loihica PV-4 around Shew_1946

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntnrdB and Shew_1946 are separated by 59 nucleotidesShew_1946 and Shew_1947 are separated by 480 nucleotides Shew_1945: nrdB - ribonucleotide-diphosphate reductase subunit beta (RefSeq), at 2,246,079 to 2,247,209 nrdB Shew_1946: Shew_1946 - ribonucleotide-diphosphate reductase subunit alpha (RefSeq), at 2,247,269 to 2,249,557 _1946 Shew_1947: Shew_1947 - HAD family hydrolase (RefSeq), at 2,250,038 to 2,250,757 _1947 Position (kb) 2247 2248 2249 2250Strain fitness (log2 ratio) -1 0 1 2at 2250.036 kb on + strandat 2250.104 kb on - strandat 2250.104 kb on - strandat 2250.275 kb on - strand, within Shew_1947

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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2,250,036 + +0.4
2,250,104 - -1.1
2,250,104 - +0.4
2,250,275 - Shew_1947 0.33 +2.0

Or see this region's nucleotide sequence