Strain Fitness in Shewanella loihica PV-4 around Shew_1911

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1910 and Shew_1911 are separated by 314 nucleotidesShew_1911 and Shew_1912 are separated by 106 nucleotides Shew_1910: Shew_1910 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,206,437 to 2,209,055 _1910 Shew_1911: Shew_1911 - hypothetical protein (RefSeq), at 2,209,370 to 2,210,011 _1911 Shew_1912: Shew_1912 - deoxyguanosinetriphosphate triphosphohydrolase-like protein (RefSeq), at 2,210,118 to 2,211,443 _1912 Position (kb) 2209 2210 2211Strain fitness (log2 ratio) -1 0 1at 2208.735 kb on + strand, within Shew_1910at 2208.852 kb on - strandat 2209.300 kb on + strandat 2209.307 kb on + strandat 2210.793 kb on - strand, within Shew_1912

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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2,208,735 + Shew_1910 0.88 -0.1
2,208,852 - +0.3
2,209,300 + -0.2
2,209,307 + +0.3
2,210,793 - Shew_1912 0.51 -1.5

Or see this region's nucleotide sequence