Strain Fitness in Shewanella loihica PV-4 around Shew_1910

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1909 and Shew_1910 are separated by 248 nucleotidesShew_1910 and Shew_1911 are separated by 314 nucleotides Shew_1909: Shew_1909 - 2OG-Fe(II) oxygenase (RefSeq), at 2,205,526 to 2,206,188 _1909 Shew_1910: Shew_1910 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase (RefSeq), at 2,206,437 to 2,209,055 _1910 Shew_1911: Shew_1911 - hypothetical protein (RefSeq), at 2,209,370 to 2,210,011 _1911 Position (kb) 2206 2207 2208 2209 2210Strain fitness (log2 ratio) -1 0 1at 2206.217 kb on - strandat 2206.321 kb on + strandat 2206.324 kb on - strandat 2206.329 kb on - strandat 2206.389 kb on + strandat 2207.506 kb on - strand, within Shew_1910at 2208.130 kb on - strand, within Shew_1910at 2208.735 kb on + strand, within Shew_1910at 2208.852 kb on - strandat 2209.300 kb on + strandat 2209.307 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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2,206,217 - +0.3
2,206,321 + +0.1
2,206,324 - +0.1
2,206,329 - +0.7
2,206,389 + -0.0
2,207,506 - Shew_1910 0.41 +1.1
2,208,130 - Shew_1910 0.65 -0.9
2,208,735 + Shew_1910 0.88 -0.1
2,208,852 - +0.3
2,209,300 + -0.2
2,209,307 + +0.3

Or see this region's nucleotide sequence