Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1386 and Shew_1387 are separated by 93 nucleotides Shew_1387 and Shew_1388 overlap by 8 nucleotides Shew_1388 and Shew_1389 are separated by 46 nucleotides
Shew_1386: Shew_1386 - CheA signal transduction histidine kinase (RefSeq), at 1,594,645 to 1,596,885
_1386
Shew_1387: Shew_1387 - chemotaxis-specific methylesterase (RefSeq), at 1,596,979 to 1,598,088
_1387
Shew_1388: Shew_1388 - hypothetical protein (RefSeq), at 1,598,081 to 1,598,704
_1388
Shew_1389: Shew_1389 - cobyrinic acid a,c-diamide synthase (RefSeq), at 1,598,751 to 1,599,542
_1389
Position (kb) 1596
1597
1598
1599 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1596.323 kb on - strand, within Shew_1386 at 1596.640 kb on - strand, within Shew_1386 at 1596.778 kb on - strand at 1596.912 kb on - strand at 1596.923 kb on + strand at 1597.785 kb on + strand, within Shew_1387 at 1598.107 kb on - strand at 1598.169 kb on + strand, within Shew_1388 at 1598.902 kb on - strand, within Shew_1389 at 1598.985 kb on - strand, within Shew_1389 at 1599.078 kb on - strand, within Shew_1389
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 1,596,323 - Shew_1386 0.75 +1.4 1,596,640 - Shew_1386 0.89 +0.8 1,596,778 - -1.0 1,596,912 - +0.3 1,596,923 + -0.6 1,597,785 + Shew_1387 0.73 -0.5 1,598,107 - +1.2 1,598,169 + Shew_1388 0.14 -0.2 1,598,902 - Shew_1389 0.19 -3.6 1,598,985 - Shew_1389 0.30 -0.9 1,599,078 - Shew_1389 0.41 -1.0
Or see this region's nucleotide sequence