Strain Fitness in Shewanella loihica PV-4 around Shew_1214

Experiment: Cephalothin 0.1 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 0.1 mg/ml
1,407,855	+				-1.1
1,407,917	+				-0.5
1,407,917	+				+0.1
1,408,122	-				+0.1
1,408,123	-				+1.0
1,408,132	+				+2.4
1,408,185	-				-0.9
1,408,192	-				+0.8
1,408,202	-				+0.2
1,409,178	-		Shew_1214	0.44	-0.1
1,409,178	-		Shew_1214	0.44	+0.7
1,409,220	-		Shew_1214	0.46	+1.1
1,409,274	-		Shew_1214	0.48	+0.7
1,409,487	+		Shew_1214	0.56	+0.1
1,409,654	-		Shew_1214	0.63	+0.8
1,409,808	-		Shew_1214	0.69	+1.3
1,410,071	-		Shew_1214	0.79	+0.6
1,410,236	+		Shew_1214	0.85	+1.1
1,410,342	+		Shew_1214	0.90	+1.0
1,410,620	+				+0.8
1,410,783	-				+2.9
1,410,856	+				-0.0
1,410,856	+				+1.0
1,410,856	+				-1.9
1,410,856	+				-0.6
1,410,864	-				-3.0
1,410,864	-				-2.0
1,410,900	+				+1.0
1,411,185	+	recA	Shew_1215	0.23	-1.0
1,411,495	+	recA	Shew_1215	0.52	-1.5
1,411,549	-	recA	Shew_1215	0.57	+1.0
1,411,575	+	recA	Shew_1215	0.60	-0.6