Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0808 and Shew_0809 are separated by 105 nucleotides Shew_0809 and Shew_0810 are separated by 265 nucleotides
Shew_0808: Shew_0808 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 925,401 to 927,065
_0808
Shew_0809: Shew_0809 - formate dehydrogenase, alpha subunit (RefSeq), at 927,171 to 931,403
_0809
Shew_0810: Shew_0810 - ion transport 2 domain-containing protein (RefSeq), at 931,669 to 932,649
_0810
Position (kb) 927
928
929
930
931
932 Strain fitness (log2 ratio) -2
-1
0
1
2 at 926.232 kb on + strand, within Shew_0808 at 926.374 kb on + strand, within Shew_0808 at 926.382 kb on - strand, within Shew_0808 at 926.395 kb on + strand, within Shew_0808 at 926.403 kb on - strand, within Shew_0808 at 926.525 kb on - strand, within Shew_0808 at 926.549 kb on + strand, within Shew_0808 at 926.770 kb on + strand, within Shew_0808 at 927.053 kb on + strand at 927.060 kb on - strand at 927.072 kb on + strand at 927.072 kb on + strand at 927.306 kb on + strand at 927.644 kb on + strand, within Shew_0809 at 927.644 kb on + strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.652 kb on - strand, within Shew_0809 at 927.700 kb on - strand, within Shew_0809 at 927.720 kb on + strand, within Shew_0809 at 927.738 kb on + strand, within Shew_0809 at 927.836 kb on + strand, within Shew_0809 at 927.844 kb on - strand, within Shew_0809 at 927.846 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.037 kb on + strand, within Shew_0809 at 928.040 kb on - strand, within Shew_0809 at 928.075 kb on - strand, within Shew_0809 at 928.152 kb on - strand, within Shew_0809 at 928.172 kb on - strand, within Shew_0809 at 928.180 kb on - strand, within Shew_0809 at 928.495 kb on - strand, within Shew_0809 at 928.584 kb on - strand, within Shew_0809 at 928.815 kb on + strand, within Shew_0809 at 928.862 kb on + strand, within Shew_0809 at 929.101 kb on - strand, within Shew_0809 at 929.257 kb on + strand, within Shew_0809 at 929.312 kb on + strand, within Shew_0809 at 929.315 kb on + strand, within Shew_0809 at 929.359 kb on + strand, within Shew_0809 at 929.497 kb on - strand, within Shew_0809 at 929.637 kb on - strand, within Shew_0809 at 929.707 kb on - strand, within Shew_0809 at 929.755 kb on + strand, within Shew_0809 at 929.763 kb on - strand, within Shew_0809 at 929.763 kb on - strand, within Shew_0809 at 930.074 kb on - strand, within Shew_0809 at 930.135 kb on + strand, within Shew_0809 at 930.143 kb on - strand, within Shew_0809 at 930.304 kb on - strand, within Shew_0809 at 930.349 kb on + strand, within Shew_0809 at 930.411 kb on + strand, within Shew_0809 at 930.419 kb on - strand, within Shew_0809 at 930.429 kb on - strand, within Shew_0809 at 930.731 kb on + strand, within Shew_0809 at 930.786 kb on + strand, within Shew_0809 at 931.046 kb on + strand at 931.054 kb on - strand at 931.054 kb on - strand at 931.087 kb on - strand at 931.197 kb on + strand at 931.317 kb on + strand at 931.534 kb on - strand at 931.653 kb on + strand at 932.197 kb on + strand, within Shew_0810 at 932.327 kb on - strand, within Shew_0810 at 932.349 kb on + strand, within Shew_0810
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 926,232 + Shew_0808 0.50 -1.1 926,374 + Shew_0808 0.58 -0.6 926,382 - Shew_0808 0.59 -0.2 926,395 + Shew_0808 0.60 -0.2 926,403 - Shew_0808 0.60 +0.5 926,525 - Shew_0808 0.68 -0.4 926,549 + Shew_0808 0.69 -0.4 926,770 + Shew_0808 0.82 +0.6 927,053 + +1.4 927,060 - -0.1 927,072 + -0.1 927,072 + -2.2 927,306 + +0.3 927,644 + Shew_0809 0.11 +0.5 927,644 + Shew_0809 0.11 +0.8 927,652 - Shew_0809 0.11 -1.4 927,652 - Shew_0809 0.11 +0.7 927,652 - Shew_0809 0.11 +0.1 927,652 - Shew_0809 0.11 -0.1 927,700 - Shew_0809 0.12 -0.6 927,720 + Shew_0809 0.13 -0.6 927,738 + Shew_0809 0.13 -0.0 927,836 + Shew_0809 0.16 +0.4 927,844 - Shew_0809 0.16 +0.2 927,846 + Shew_0809 0.16 -0.0 928,037 + Shew_0809 0.20 +0.1 928,037 + Shew_0809 0.20 +0.2 928,040 - Shew_0809 0.21 -2.0 928,075 - Shew_0809 0.21 -0.2 928,152 - Shew_0809 0.23 -0.1 928,172 - Shew_0809 0.24 -0.5 928,180 - Shew_0809 0.24 -0.2 928,495 - Shew_0809 0.31 -0.2 928,584 - Shew_0809 0.33 -0.0 928,815 + Shew_0809 0.39 +0.1 928,862 + Shew_0809 0.40 -1.7 929,101 - Shew_0809 0.46 +0.8 929,257 + Shew_0809 0.49 -0.4 929,312 + Shew_0809 0.51 +0.0 929,315 + Shew_0809 0.51 -0.4 929,359 + Shew_0809 0.52 -0.8 929,497 - Shew_0809 0.55 +0.0 929,637 - Shew_0809 0.58 +0.7 929,707 - Shew_0809 0.60 +0.0 929,755 + Shew_0809 0.61 -0.0 929,763 - Shew_0809 0.61 -0.3 929,763 - Shew_0809 0.61 -0.6 930,074 - Shew_0809 0.69 -0.1 930,135 + Shew_0809 0.70 -1.2 930,143 - Shew_0809 0.70 -0.9 930,304 - Shew_0809 0.74 +1.5 930,349 + Shew_0809 0.75 -0.4 930,411 + Shew_0809 0.77 -1.5 930,419 - Shew_0809 0.77 -0.8 930,429 - Shew_0809 0.77 -0.6 930,731 + Shew_0809 0.84 +0.6 930,786 + Shew_0809 0.85 -0.7 931,046 + -0.4 931,054 - -0.2 931,054 - +1.9 931,087 - -0.9 931,197 + -0.1 931,317 + +0.1 931,534 - -0.5 931,653 + +0.1 932,197 + Shew_0810 0.54 -2.0 932,327 - Shew_0810 0.67 -0.2 932,349 + Shew_0810 0.69 +0.2
Or see this region's nucleotide sequence