Strain Fitness in Shewanella loihica PV-4 around Shew_0548

Experiment: Cephalothin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0547 and Shew_0548 are separated by 194 nucleotidesShew_0548 and Shew_0549 are separated by 48 nucleotides Shew_0547: Shew_0547 - calcineurin phosphoesterase C-terminal domain-containing protein (RefSeq), at 617,164 to 618,003 _0547 Shew_0548: Shew_0548 - yqiA-like hydrolase, affects the cell envelope (from data), at 618,198 to 618,776 _0548 Shew_0549: Shew_0549 - DNA topoisomerase IV subunit B (RefSeq), at 618,825 to 620,711 _0549 Position (kb) 618 619Strain fitness (log2 ratio) -3 -2 -1 0 1at 617.689 kb on + strand, within Shew_0547at 618.437 kb on + strand, within Shew_0548at 618.445 kb on - strand, within Shew_0548at 618.562 kb on + strand, within Shew_0548

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml
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617,689 + Shew_0547 0.62 -2.9
618,437 + Shew_0548 0.41 +0.3
618,445 - Shew_0548 0.43 +0.9
618,562 + Shew_0548 0.63 -0.3

Or see this region's nucleotide sequence