Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0418 and Shew_0419 are separated by 35 nucleotides Shew_0419 and Shew_0420 are separated by 0 nucleotides
Shew_0418: Shew_0418 - arsenical-resistance protein (RefSeq), at 471,758 to 472,792
_0418
Shew_0419: Shew_0419 - glyceraldehyde-3-phosphate dehydrogenase (RefSeq), at 472,828 to 473,838
_0419
Shew_0420: Shew_0420 - major facilitator transporter (RefSeq), at 473,839 to 475,071
_0420
Position (kb) 472
473
474 Strain fitness (log2 ratio) -2
-1
0
1 at 472.188 kb on + strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.196 kb on - strand, within Shew_0418 at 472.280 kb on + strand, within Shew_0418 at 472.288 kb on - strand, within Shew_0418 at 472.292 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.314 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.405 kb on + strand, within Shew_0418 at 472.413 kb on - strand, within Shew_0418 at 472.416 kb on + strand, within Shew_0418 at 472.435 kb on + strand, within Shew_0418 at 472.473 kb on - strand, within Shew_0418 at 472.595 kb on + strand, within Shew_0418 at 472.690 kb on - strand at 472.794 kb on - strand at 473.607 kb on + strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419 at 473.615 kb on - strand, within Shew_0419 at 473.795 kb on + strand at 473.904 kb on + strand at 474.621 kb on + strand, within Shew_0420 at 474.643 kb on + strand, within Shew_0420
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 472,188 + Shew_0418 0.42 -0.9 472,196 - Shew_0418 0.42 +0.3 472,196 - Shew_0418 0.42 +0.2 472,280 + Shew_0418 0.50 +0.3 472,288 - Shew_0418 0.51 +0.0 472,292 + Shew_0418 0.52 +0.2 472,314 + Shew_0418 0.54 -1.0 472,314 + Shew_0418 0.54 -0.9 472,405 + Shew_0418 0.63 +0.3 472,405 + Shew_0418 0.63 +0.1 472,413 - Shew_0418 0.63 +0.2 472,416 + Shew_0418 0.64 +0.3 472,435 + Shew_0418 0.65 -2.1 472,473 - Shew_0418 0.69 +0.6 472,595 + Shew_0418 0.81 +0.1 472,690 - -1.9 472,794 - +1.1 473,607 + Shew_0419 0.77 +0.7 473,615 - Shew_0419 0.78 +1.0 473,615 - Shew_0419 0.78 +0.6 473,795 + -2.7 473,904 + +0.7 474,621 + Shew_0420 0.63 +0.2 474,643 + Shew_0420 0.65 +1.2
Or see this region's nucleotide sequence