Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0301 and Shew_0302 are separated by 74 nucleotides Shew_0302 and Shew_0303 are separated by 106 nucleotides Shew_0303 and Shew_0304 are separated by 222 nucleotides Shew_0304 and Shew_0305 are separated by 240 nucleotides
Shew_0301: Shew_0301 - AsnC family transcriptional regulator (RefSeq), at 323,549 to 324,049
_0301
Shew_0302: Shew_0302 - phosphoesterase, PA-phosphatase related (RefSeq), at 324,124 to 324,891
_0302
Shew_0303: Shew_0303 - hypothetical protein (RefSeq), at 324,998 to 326,350
_0303
Shew_0304: Shew_0304 - hypothetical protein (RefSeq), at 326,573 to 326,833
_0304
Shew_0305: Shew_0305 - ATP-dependent DNA helicase Rep (RefSeq), at 327,074 to 329,086
_0305
Position (kb) 324
325
326
327 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 324.066 kb on + strand at 324.244 kb on + strand, within Shew_0302 at 324.271 kb on + strand, within Shew_0302 at 324.295 kb on + strand, within Shew_0302 at 324.334 kb on - strand, within Shew_0302 at 324.603 kb on + strand, within Shew_0302 at 324.713 kb on + strand, within Shew_0302 at 324.721 kb on - strand, within Shew_0302 at 324.744 kb on - strand, within Shew_0302 at 324.839 kb on + strand at 324.947 kb on - strand at 325.019 kb on - strand at 325.086 kb on - strand at 325.449 kb on + strand, within Shew_0303 at 325.449 kb on + strand, within Shew_0303 at 325.492 kb on + strand, within Shew_0303 at 325.640 kb on - strand, within Shew_0303 at 325.663 kb on + strand, within Shew_0303 at 325.666 kb on - strand, within Shew_0303 at 325.791 kb on - strand, within Shew_0303 at 325.931 kb on + strand, within Shew_0303 at 326.104 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.128 kb on - strand, within Shew_0303 at 326.184 kb on + strand, within Shew_0303 at 326.265 kb on - strand at 326.403 kb on - strand at 326.518 kb on - strand at 326.649 kb on + strand, within Shew_0304 at 326.764 kb on + strand, within Shew_0304 at 326.772 kb on - strand, within Shew_0304 at 326.934 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 324,066 + +0.5 324,244 + Shew_0302 0.16 +1.3 324,271 + Shew_0302 0.19 -0.0 324,295 + Shew_0302 0.22 +0.1 324,334 - Shew_0302 0.27 +0.1 324,603 + Shew_0302 0.62 -0.2 324,713 + Shew_0302 0.77 +0.4 324,721 - Shew_0302 0.78 +1.1 324,744 - Shew_0302 0.81 +0.3 324,839 + -1.8 324,947 - +0.2 325,019 - -2.5 325,086 - -0.0 325,449 + Shew_0303 0.33 -0.1 325,449 + Shew_0303 0.33 +0.3 325,492 + Shew_0303 0.37 -0.1 325,640 - Shew_0303 0.47 -0.3 325,663 + Shew_0303 0.49 +0.0 325,666 - Shew_0303 0.49 +0.4 325,791 - Shew_0303 0.59 +0.5 325,931 + Shew_0303 0.69 +0.1 326,104 - Shew_0303 0.82 +0.9 326,128 - Shew_0303 0.84 +0.9 326,128 - Shew_0303 0.84 +0.0 326,184 + Shew_0303 0.88 +0.1 326,265 - +0.1 326,403 - +0.3 326,518 - +0.6 326,649 + Shew_0304 0.29 -0.1 326,764 + Shew_0304 0.73 -5.0 326,772 - Shew_0304 0.76 -6.2 326,934 - +0.5
Or see this region's nucleotide sequence