Experiment: Cephalothin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0269 and Shew_0270 are separated by 68 nucleotides Shew_0270 and Shew_0271 are separated by 140 nucleotides Shew_0271 and Shew_0272 are separated by 52 nucleotides Shew_0272 and Shew_0273 are separated by 171 nucleotides
Shew_0269: Shew_0269 - hypothetical protein (RefSeq), at 285,926 to 286,813
_0269
Shew_0270: Shew_0270 - hypothetical protein (RefSeq), at 286,882 to 287,517
_0270
Shew_0271: Shew_0271 - phospholipase (RefSeq), at 287,658 to 289,007
_0271
Shew_0272: Shew_0272 - cupin 2 domain-containing protein (RefSeq), at 289,060 to 289,803
_0272
Shew_0273: Shew_0273 - hypothetical protein (RefSeq), at 289,975 to 291,039
_0273
Position (kb) 287
288
289
290 Strain fitness (log2 ratio) -1
0
1 at 287.616 kb on + strand at 287.697 kb on + strand at 287.697 kb on + strand at 287.705 kb on - strand at 287.737 kb on - strand at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.093 kb on - strand, within Shew_0271 at 288.098 kb on - strand, within Shew_0271 at 288.167 kb on - strand, within Shew_0271 at 288.502 kb on + strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.510 kb on - strand, within Shew_0271 at 288.778 kb on - strand, within Shew_0271 at 288.892 kb on - strand at 288.946 kb on + strand at 289.103 kb on - strand at 289.135 kb on + strand, within Shew_0272 at 289.335 kb on + strand, within Shew_0272 at 289.336 kb on + strand, within Shew_0272 at 289.431 kb on + strand, within Shew_0272 at 289.644 kb on + strand, within Shew_0272
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.1 mg/ml remove 287,616 + +1.3 287,697 + -0.8 287,697 + +0.6 287,705 - +0.2 287,737 - +0.0 288,093 - Shew_0271 0.32 +0.8 288,093 - Shew_0271 0.32 +0.1 288,093 - Shew_0271 0.32 -0.1 288,098 - Shew_0271 0.33 -0.1 288,167 - Shew_0271 0.38 +0.1 288,502 + Shew_0271 0.63 +0.7 288,510 - Shew_0271 0.63 +1.0 288,510 - Shew_0271 0.63 +1.7 288,510 - Shew_0271 0.63 +0.6 288,778 - Shew_0271 0.83 -1.4 288,892 - -0.7 288,946 + +0.9 289,103 - -0.0 289,135 + Shew_0272 0.10 -0.6 289,335 + Shew_0272 0.37 +0.3 289,336 + Shew_0272 0.37 +0.1 289,431 + Shew_0272 0.50 -0.8 289,644 + Shew_0272 0.78 -1.0
Or see this region's nucleotide sequence