Experiment: Cobalt chloride 0.04 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SO0198 and SO0198.1 are separated by 282 nucleotides SO0198.1 and SO_0201 are separated by 66 nucleotides
SO0198: SO0198 - transcriptional regulator, TetR family (NCBI ptt file), at 208,491 to 209,105
SO0198
SO0198.1: SO0198.1 - putative transposase (NCBI ptt file), at 209,388 to 209,519
SO0198.1
SO_0201: SO_0201 - no description, at 209,586 to 210,287
_0201
Position (kb) 209
210 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 208.422 kb on + strand at 208.426 kb on - strand at 208.435 kb on - strand at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.556 kb on + strand, within SO0198 at 208.561 kb on + strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.564 kb on - strand, within SO0198 at 208.712 kb on + strand, within SO0198 at 208.737 kb on - strand, within SO0198 at 208.939 kb on + strand, within SO0198 at 208.945 kb on - strand, within SO0198 at 208.947 kb on - strand, within SO0198 at 209.006 kb on - strand, within SO0198 at 209.022 kb on - strand, within SO0198 at 209.099 kb on - strand at 209.163 kb on + strand at 209.195 kb on + strand at 209.253 kb on + strand at 209.261 kb on - strand at 209.261 kb on - strand at 209.281 kb on + strand at 209.281 kb on + strand at 209.352 kb on + strand at 209.352 kb on + strand at 209.424 kb on + strand, within SO0198.1 at 209.443 kb on - strand, within SO0198.1 at 209.523 kb on + strand at 209.531 kb on - strand at 209.543 kb on + strand at 209.566 kb on + strand at 209.571 kb on + strand at 209.574 kb on + strand at 209.579 kb on + strand at 209.610 kb on - strand at 209.708 kb on + strand, within SO_0201 at 209.765 kb on + strand, within SO_0201 at 209.824 kb on + strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.832 kb on - strand, within SO_0201 at 209.887 kb on + strand, within SO_0201 at 209.960 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 209.997 kb on + strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.005 kb on - strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.016 kb on + strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.024 kb on - strand, within SO_0201 at 210.160 kb on + strand, within SO_0201 at 210.171 kb on + strand, within SO_0201 at 210.276 kb on + strand at 210.284 kb on - strand at 210.339 kb on + strand at 210.340 kb on + strand at 210.345 kb on - strand at 210.350 kb on + strand at 210.364 kb on + strand at 210.429 kb on + strand at 210.440 kb on + strand at 210.512 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM remove 208,422 + +1.1 208,426 - -0.7 208,435 - -1.1 208,556 + SO0198 0.11 -1.7 208,556 + SO0198 0.11 -2.0 208,556 + SO0198 0.11 -0.9 208,556 + SO0198 0.11 -3.8 208,556 + SO0198 0.11 -2.8 208,561 + SO0198 0.11 -0.6 208,564 - SO0198 0.12 -2.4 208,564 - SO0198 0.12 -1.4 208,564 - SO0198 0.12 -1.1 208,564 - SO0198 0.12 -0.2 208,564 - SO0198 0.12 -2.5 208,564 - SO0198 0.12 -1.4 208,564 - SO0198 0.12 -3.3 208,564 - SO0198 0.12 -3.1 208,564 - SO0198 0.12 -1.1 208,712 + SO0198 0.36 -2.0 208,737 - SO0198 0.40 -1.8 208,939 + SO0198 0.73 -3.2 208,945 - SO0198 0.74 -3.1 208,947 - SO0198 0.74 -1.0 209,006 - SO0198 0.84 -0.0 209,022 - SO0198 0.86 -1.8 209,099 - -0.4 209,163 + +0.4 209,195 + +0.1 209,253 + -0.0 209,261 - -1.1 209,261 - +0.4 209,281 + +0.7 209,281 + -1.9 209,352 + +0.0 209,352 + -0.1 209,424 + SO0198.1 0.27 +0.0 209,443 - SO0198.1 0.42 +1.4 209,523 + +0.0 209,531 - +0.0 209,543 + +0.8 209,566 + +0.5 209,571 + +0.3 209,574 + -0.4 209,579 + +0.3 209,610 - +0.3 209,708 + SO_0201 0.17 +0.1 209,765 + SO_0201 0.25 +0.2 209,824 + SO_0201 0.34 +0.3 209,832 - SO_0201 0.35 +1.3 209,832 - SO_0201 0.35 -0.1 209,887 + SO_0201 0.43 -0.1 209,960 + SO_0201 0.53 +0.5 209,997 + SO_0201 0.59 -0.5 209,997 + SO_0201 0.59 +0.1 210,005 - SO_0201 0.60 -0.1 210,005 - SO_0201 0.60 -0.1 210,016 + SO_0201 0.61 +0.4 210,016 + SO_0201 0.61 +2.2 210,016 + SO_0201 0.61 +0.6 210,016 + SO_0201 0.61 +0.4 210,024 - SO_0201 0.62 -0.2 210,024 - SO_0201 0.62 +0.5 210,024 - SO_0201 0.62 +0.8 210,160 + SO_0201 0.82 +0.4 210,171 + SO_0201 0.83 -0.2 210,276 + +0.3 210,284 - -0.3 210,339 + +0.8 210,340 + +1.3 210,345 - +0.4 210,350 + -0.2 210,364 + -0.0 210,429 + -0.4 210,440 + +0.7 210,512 - +0.3
Or see this region's nucleotide sequence