Strain Fitness in Shewanella oneidensis MR-1 around SO0152

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSO0151 and SO0152 are separated by 25 nucleotidesSO0152 and SO0154 are separated by 241 nucleotides SO0151: SO0151 - hypothetical SAM-dependent methyltransferase (NCBI ptt file), at 159,448 to 160,215 SO0151 SO0152: SO0152 - hypothetical carboxypeptidase (NCBI ptt file), at 160,241 to 162,124 SO0152 SO0154: SO0154 - conserved hypothetical protein (NCBI ptt file), at 162,366 to 163,490 SO0154 Position (kb) 160 161 162 163Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 159.382 kb on + strandat 159.405 kb on + strandat 159.408 kb on - strandat 159.428 kb on - strandat 159.499 kb on + strandat 159.531 kb on - strand, within SO0151at 159.726 kb on + strand, within SO0151at 159.811 kb on + strand, within SO0151at 159.830 kb on + strand, within SO0151at 159.863 kb on + strand, within SO0151at 159.880 kb on + strand, within SO0151at 159.882 kb on + strand, within SO0151at 159.890 kb on - strand, within SO0151at 159.890 kb on - strand, within SO0151at 159.972 kb on + strand, within SO0151at 160.014 kb on - strand, within SO0151at 160.015 kb on - strand, within SO0151at 160.015 kb on - strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.063 kb on + strand, within SO0151at 160.071 kb on - strand, within SO0151at 160.071 kb on - strand, within SO0151at 160.110 kb on - strand, within SO0151at 160.129 kb on - strand, within SO0151at 160.129 kb on - strand, within SO0151at 160.173 kb on + strandat 160.198 kb on - strandat 160.200 kb on + strandat 160.200 kb on + strandat 160.208 kb on - strandat 160.247 kb on - strandat 160.259 kb on - strandat 160.290 kb on + strandat 160.298 kb on - strandat 160.300 kb on + strandat 160.308 kb on - strandat 160.308 kb on - strandat 160.340 kb on - strandat 160.349 kb on + strandat 160.386 kb on - strandat 160.427 kb on + strandat 160.435 kb on - strand, within SO0152at 160.448 kb on + strand, within SO0152at 160.456 kb on - strand, within SO0152at 160.456 kb on - strand, within SO0152at 160.467 kb on - strand, within SO0152at 160.526 kb on + strand, within SO0152at 160.527 kb on + strand, within SO0152at 160.534 kb on - strand, within SO0152at 160.542 kb on + strand, within SO0152at 160.550 kb on - strand, within SO0152at 160.573 kb on - strand, within SO0152at 160.601 kb on + strand, within SO0152at 160.643 kb on - strand, within SO0152at 160.643 kb on - strand, within SO0152at 160.657 kb on + strand, within SO0152at 160.665 kb on - strand, within SO0152at 160.691 kb on + strand, within SO0152at 160.691 kb on + strand, within SO0152at 160.783 kb on + strand, within SO0152at 160.824 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.831 kb on + strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.839 kb on - strand, within SO0152at 160.882 kb on + strand, within SO0152at 160.911 kb on + strand, within SO0152at 160.917 kb on + strand, within SO0152at 160.925 kb on - strand, within SO0152at 160.970 kb on + strand, within SO0152at 161.042 kb on - strand, within SO0152at 161.044 kb on + strand, within SO0152at 161.077 kb on + strand, within SO0152at 161.077 kb on + strand, within SO0152at 161.085 kb on - strand, within SO0152at 161.142 kb on - strand, within SO0152at 161.166 kb on + strand, within SO0152at 161.166 kb on + strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.174 kb on - strand, within SO0152at 161.177 kb on + strand, within SO0152at 161.294 kb on + strand, within SO0152at 161.320 kb on - strand, within SO0152at 161.357 kb on + strand, within SO0152at 161.392 kb on + strand, within SO0152at 161.419 kb on + strand, within SO0152at 161.426 kb on + strand, within SO0152at 161.427 kb on + strand, within SO0152at 161.627 kb on + strand, within SO0152at 161.666 kb on + strand, within SO0152at 161.749 kb on - strand, within SO0152at 161.765 kb on + strand, within SO0152at 161.845 kb on + strand, within SO0152at 161.846 kb on + strand, within SO0152at 161.854 kb on - strand, within SO0152at 161.881 kb on - strand, within SO0152at 161.897 kb on + strand, within SO0152at 161.897 kb on + strand, within SO0152at 161.905 kb on - strand, within SO0152at 161.912 kb on + strand, within SO0152at 161.912 kb on + strand, within SO0152at 161.926 kb on + strand, within SO0152at 161.926 kb on + strand, within SO0152at 162.005 kb on + strandat 162.053 kb on + strandat 162.061 kb on - strandat 162.061 kb on - strandat 162.061 kb on - strandat 162.122 kb on - strandat 162.171 kb on + strandat 162.343 kb on - strandat 162.452 kb on - strandat 162.488 kb on - strand, within SO0154at 162.502 kb on - strand, within SO0154at 162.535 kb on - strand, within SO0154at 162.545 kb on + strand, within SO0154at 162.566 kb on + strand, within SO0154at 162.566 kb on + strand, within SO0154at 162.566 kb on + strand, within SO0154at 162.598 kb on + strand, within SO0154at 162.659 kb on - strand, within SO0154at 162.742 kb on + strand, within SO0154at 162.754 kb on + strand, within SO0154at 162.854 kb on + strand, within SO0154at 162.945 kb on + strand, within SO0154at 162.969 kb on - strand, within SO0154at 162.987 kb on + strand, within SO0154at 162.992 kb on - strand, within SO0154at 163.089 kb on - strand, within SO0154

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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159,382 + +0.1
159,405 + +0.9
159,408 - +0.1
159,428 - -0.4
159,499 + +0.5
159,531 - SO0151 0.11 +0.2
159,726 + SO0151 0.36 -0.1
159,811 + SO0151 0.47 +0.3
159,830 + SO0151 0.50 -1.9
159,863 + SO0151 0.54 -0.5
159,880 + SO0151 0.56 +0.3
159,882 + SO0151 0.57 +0.9
159,890 - SO0151 0.58 +0.3
159,890 - SO0151 0.58 +0.5
159,972 + SO0151 0.68 +0.5
160,014 - SO0151 0.74 +1.1
160,015 - SO0151 0.74 -0.1
160,015 - SO0151 0.74 -0.2
160,063 + SO0151 0.80 -0.6
160,063 + SO0151 0.80 -0.4
160,063 + SO0151 0.80 +0.4
160,063 + SO0151 0.80 +0.2
160,063 + SO0151 0.80 +0.2
160,071 - SO0151 0.81 +0.6
160,071 - SO0151 0.81 -1.0
160,110 - SO0151 0.86 +0.3
160,129 - SO0151 0.89 -0.5
160,129 - SO0151 0.89 +0.2
160,173 + +0.0
160,198 - -0.1
160,200 + -0.1
160,200 + -0.6
160,208 - +0.7
160,247 - +1.2
160,259 - +0.3
160,290 + -1.0
160,298 - -0.4
160,300 + +0.2
160,308 - +0.7
160,308 - +0.6
160,340 - +4.0
160,349 + +0.3
160,386 - +0.5
160,427 + -0.3
160,435 - SO0152 0.10 -0.1
160,448 + SO0152 0.11 +0.7
160,456 - SO0152 0.11 -0.6
160,456 - SO0152 0.11 -0.4
160,467 - SO0152 0.12 -0.4
160,526 + SO0152 0.15 -1.8
160,527 + SO0152 0.15 -0.2
160,534 - SO0152 0.16 -0.7
160,542 + SO0152 0.16 +0.4
160,550 - SO0152 0.16 +0.2
160,573 - SO0152 0.18 +0.7
160,601 + SO0152 0.19 -0.6
160,643 - SO0152 0.21 +0.1
160,643 - SO0152 0.21 +0.4
160,657 + SO0152 0.22 +0.5
160,665 - SO0152 0.23 -0.6
160,691 + SO0152 0.24 +0.2
160,691 + SO0152 0.24 +0.2
160,783 + SO0152 0.29 -0.5
160,824 + SO0152 0.31 +0.0
160,831 + SO0152 0.31 +0.3
160,831 + SO0152 0.31 -0.4
160,831 + SO0152 0.31 +0.7
160,831 + SO0152 0.31 +1.2
160,839 - SO0152 0.32 -0.4
160,839 - SO0152 0.32 -0.4
160,839 - SO0152 0.32 -0.6
160,882 + SO0152 0.34 +0.0
160,911 + SO0152 0.36 -1.5
160,917 + SO0152 0.36 -0.5
160,925 - SO0152 0.36 +0.5
160,970 + SO0152 0.39 +0.8
161,042 - SO0152 0.43 -1.7
161,044 + SO0152 0.43 -0.1
161,077 + SO0152 0.44 -0.4
161,077 + SO0152 0.44 -0.6
161,085 - SO0152 0.45 -1.0
161,142 - SO0152 0.48 -0.4
161,166 + SO0152 0.49 +0.3
161,166 + SO0152 0.49 -0.5
161,174 - SO0152 0.50 -0.4
161,174 - SO0152 0.50 -0.7
161,174 - SO0152 0.50 -0.1
161,177 + SO0152 0.50 +0.9
161,294 + SO0152 0.56 +1.0
161,320 - SO0152 0.57 +0.0
161,357 + SO0152 0.59 +0.0
161,392 + SO0152 0.61 -0.9
161,419 + SO0152 0.63 +0.3
161,426 + SO0152 0.63 +1.1
161,427 + SO0152 0.63 +0.2
161,627 + SO0152 0.74 -0.1
161,666 + SO0152 0.76 +0.8
161,749 - SO0152 0.80 +0.7
161,765 + SO0152 0.81 +0.2
161,845 + SO0152 0.85 +0.4
161,846 + SO0152 0.85 +0.3
161,854 - SO0152 0.86 +1.0
161,881 - SO0152 0.87 +0.6
161,897 + SO0152 0.88 -0.1
161,897 + SO0152 0.88 +0.3
161,905 - SO0152 0.88 +0.4
161,912 + SO0152 0.89 +0.4
161,912 + SO0152 0.89 -0.2
161,926 + SO0152 0.89 +0.7
161,926 + SO0152 0.89 -0.3
162,005 + -0.5
162,053 + +0.4
162,061 - +0.1
162,061 - -0.6
162,061 - +0.3
162,122 - +0.4
162,171 + -1.0
162,343 - -0.6
162,452 - -1.0
162,488 - SO0154 0.11 -0.3
162,502 - SO0154 0.12 +0.5
162,535 - SO0154 0.15 +0.3
162,545 + SO0154 0.16 +1.0
162,566 + SO0154 0.18 +0.1
162,566 + SO0154 0.18 -0.0
162,566 + SO0154 0.18 -0.1
162,598 + SO0154 0.21 +0.4
162,659 - SO0154 0.26 -1.9
162,742 + SO0154 0.33 -0.1
162,754 + SO0154 0.34 +0.8
162,854 + SO0154 0.43 +0.5
162,945 + SO0154 0.51 -1.0
162,969 - SO0154 0.54 +0.5
162,987 + SO0154 0.55 +0.7
162,992 - SO0154 0.56 -0.2
163,089 - SO0154 0.64 -0.8

Or see this region's nucleotide sequence