Strain Fitness in Marinobacter adhaerens HP15 around HP15_3975

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3973 and HP15_3974 overlap by 14 nucleotidesHP15_3974 and HP15_3975 overlap by 4 nucleotidesHP15_3975 and HP15_3976 are separated by 87 nucleotides HP15_3973: HP15_3973 - long-chain-fatty-acid-CoA ligase, at 4,202,337 to 4,204,427 _3973 HP15_3974: HP15_3974 - short chain dehydrogenase, at 4,204,414 to 4,205,196 _3974 HP15_3975: HP15_3975 - conserved hypothetical protein, secreted, at 4,205,193 to 4,205,813 _3975 HP15_3976: HP15_3976 - protein containing diguanylate cyclase, predicted domains, at 4,205,901 to 4,207,421 _3976 Position (kb) 4205 4206Strain fitness (log2 ratio) -1 0 1 2at 4204.222 kb on - strandat 4204.378 kb on + strandat 4204.640 kb on + strand, within HP15_3974at 4204.648 kb on - strand, within HP15_3974at 4204.660 kb on - strand, within HP15_3974at 4204.660 kb on - strand, within HP15_3974at 4204.665 kb on - strand, within HP15_3974at 4204.693 kb on + strand, within HP15_3974at 4204.715 kb on - strand, within HP15_3974at 4204.789 kb on + strand, within HP15_3974at 4204.797 kb on - strand, within HP15_3974at 4204.797 kb on - strand, within HP15_3974at 4204.810 kb on + strand, within HP15_3974at 4204.859 kb on + strand, within HP15_3974at 4204.897 kb on + strand, within HP15_3974at 4204.905 kb on - strand, within HP15_3974at 4204.928 kb on + strand, within HP15_3974at 4204.956 kb on - strand, within HP15_3974at 4204.978 kb on + strand, within HP15_3974at 4205.001 kb on - strand, within HP15_3974at 4205.126 kb on - strandat 4205.185 kb on - strandat 4205.253 kb on + strandat 4205.331 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.410 kb on + strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.418 kb on - strand, within HP15_3975at 4205.465 kb on + strand, within HP15_3975at 4205.465 kb on + strand, within HP15_3975at 4205.549 kb on - strand, within HP15_3975at 4205.690 kb on + strand, within HP15_3975at 4205.696 kb on + strand, within HP15_3975at 4205.704 kb on - strand, within HP15_3975at 4205.787 kb on + strandat 4205.787 kb on + strandat 4205.846 kb on - strandat 4205.887 kb on + strandat 4206.119 kb on + strand, within HP15_3976at 4206.211 kb on - strand, within HP15_3976at 4206.211 kb on - strand, within HP15_3976at 4206.232 kb on + strand, within HP15_3976at 4206.252 kb on - strand, within HP15_3976at 4206.271 kb on + strand, within HP15_3976at 4206.272 kb on - strand, within HP15_3976at 4206.279 kb on - strand, within HP15_3976at 4206.427 kb on + strand, within HP15_3976at 4206.512 kb on + strand, within HP15_3976at 4206.512 kb on + strand, within HP15_3976at 4206.553 kb on - strand, within HP15_3976at 4206.553 kb on - strand, within HP15_3976at 4206.569 kb on + strand, within HP15_3976at 4206.577 kb on - strand, within HP15_3976at 4206.577 kb on - strand, within HP15_3976at 4206.638 kb on - strand, within HP15_3976at 4206.654 kb on + strand, within HP15_3976at 4206.762 kb on + strand, within HP15_3976

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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4,204,222 - -0.2
4,204,378 + +0.8
4,204,640 + HP15_3974 0.29 -0.2
4,204,648 - HP15_3974 0.30 +0.4
4,204,660 - HP15_3974 0.31 +1.4
4,204,660 - HP15_3974 0.31 -0.0
4,204,665 - HP15_3974 0.32 -0.3
4,204,693 + HP15_3974 0.36 +0.2
4,204,715 - HP15_3974 0.38 +0.2
4,204,789 + HP15_3974 0.48 +0.2
4,204,797 - HP15_3974 0.49 +1.7
4,204,797 - HP15_3974 0.49 +1.1
4,204,810 + HP15_3974 0.51 +0.4
4,204,859 + HP15_3974 0.57 +0.6
4,204,897 + HP15_3974 0.62 +0.9
4,204,905 - HP15_3974 0.63 +0.1
4,204,928 + HP15_3974 0.66 -0.6
4,204,956 - HP15_3974 0.69 -0.4
4,204,978 + HP15_3974 0.72 +0.1
4,205,001 - HP15_3974 0.75 -0.0
4,205,126 - +0.6
4,205,185 - -0.0
4,205,253 + -0.2
4,205,331 + HP15_3975 0.22 +0.8
4,205,410 + HP15_3975 0.35 +2.5
4,205,410 + HP15_3975 0.35 -0.9
4,205,410 + HP15_3975 0.35 +0.5
4,205,410 + HP15_3975 0.35 -0.1
4,205,410 + HP15_3975 0.35 +0.0
4,205,410 + HP15_3975 0.35 -0.2
4,205,418 - HP15_3975 0.36 +0.2
4,205,418 - HP15_3975 0.36 +0.1
4,205,418 - HP15_3975 0.36 -0.3
4,205,465 + HP15_3975 0.44 -0.6
4,205,465 + HP15_3975 0.44 +0.1
4,205,549 - HP15_3975 0.57 +1.0
4,205,690 + HP15_3975 0.80 +1.1
4,205,696 + HP15_3975 0.81 +1.1
4,205,704 - HP15_3975 0.82 -0.2
4,205,787 + -0.5
4,205,787 + -0.2
4,205,846 - -0.6
4,205,887 + +0.4
4,206,119 + HP15_3976 0.14 +1.0
4,206,211 - HP15_3976 0.20 +1.2
4,206,211 - HP15_3976 0.20 -0.2
4,206,232 + HP15_3976 0.22 +0.3
4,206,252 - HP15_3976 0.23 +1.2
4,206,271 + HP15_3976 0.24 -0.4
4,206,272 - HP15_3976 0.24 -0.5
4,206,279 - HP15_3976 0.25 -0.1
4,206,427 + HP15_3976 0.35 +1.2
4,206,512 + HP15_3976 0.40 +0.5
4,206,512 + HP15_3976 0.40 +0.6
4,206,553 - HP15_3976 0.43 -0.7
4,206,553 - HP15_3976 0.43 -0.5
4,206,569 + HP15_3976 0.44 -0.7
4,206,577 - HP15_3976 0.44 -0.3
4,206,577 - HP15_3976 0.44 +1.3
4,206,638 - HP15_3976 0.48 +0.8
4,206,654 + HP15_3976 0.50 +0.1
4,206,762 + HP15_3976 0.57 +2.2

Or see this region's nucleotide sequence