Strain Fitness in Marinobacter adhaerens HP15 around HP15_3516

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3514 and HP15_3515 are separated by 20 nucleotidesHP15_3515 and HP15_3516 are separated by 118 nucleotidesHP15_3516 and HP15_3517 are separated by 27 nucleotidesHP15_3517 and HP15_3518 are separated by 11 nucleotides HP15_3514: HP15_3514 - response regulator receiver domain protein (CheY), at 3,696,500 to 3,696,862 _3514 HP15_3515: HP15_3515 - chemotaxis signal transduction protein, at 3,696,883 to 3,697,428 _3515 HP15_3516: HP15_3516 - methyl-accepting chemotaxis sensory transducer, at 3,697,547 to 3,699,595 _3516 HP15_3517: HP15_3517 - protein-glutamate O-methyltransferase, at 3,699,623 to 3,700,522 _3517 HP15_3518: HP15_3518 - CheA signal transduction histidine kinase, at 3,700,534 to 3,708,128 _3518 Position (kb) 3697 3698 3699 3700Strain fitness (log2 ratio) -3 -2 -1 0 1at 3696.568 kb on + strand, within HP15_3514at 3696.590 kb on + strand, within HP15_3514at 3696.590 kb on + strand, within HP15_3514at 3696.678 kb on + strand, within HP15_3514at 3696.678 kb on + strand, within HP15_3514at 3696.708 kb on - strand, within HP15_3514at 3696.974 kb on + strand, within HP15_3515at 3696.982 kb on - strand, within HP15_3515at 3697.085 kb on + strand, within HP15_3515at 3697.087 kb on - strand, within HP15_3515at 3697.379 kb on - strandat 3697.389 kb on + strandat 3697.422 kb on + strandat 3697.422 kb on + strandat 3697.438 kb on - strandat 3697.472 kb on - strandat 3697.553 kb on - strandat 3697.553 kb on - strandat 3697.625 kb on - strandat 3697.645 kb on + strandat 3697.655 kb on + strandat 3697.683 kb on + strandat 3697.722 kb on - strandat 3697.752 kb on + strand, within HP15_3516at 3697.797 kb on - strand, within HP15_3516at 3697.855 kb on - strand, within HP15_3516at 3697.881 kb on - strand, within HP15_3516at 3697.940 kb on - strand, within HP15_3516at 3697.940 kb on - strand, within HP15_3516at 3698.043 kb on + strand, within HP15_3516at 3698.046 kb on - strand, within HP15_3516at 3698.046 kb on - strand, within HP15_3516at 3698.159 kb on - strand, within HP15_3516at 3698.185 kb on + strand, within HP15_3516at 3698.218 kb on + strand, within HP15_3516at 3698.307 kb on - strand, within HP15_3516at 3698.418 kb on + strand, within HP15_3516at 3698.438 kb on + strand, within HP15_3516at 3698.446 kb on - strand, within HP15_3516at 3698.446 kb on - strand, within HP15_3516at 3698.495 kb on + strand, within HP15_3516at 3698.498 kb on - strand, within HP15_3516at 3698.503 kb on - strand, within HP15_3516at 3698.510 kb on + strand, within HP15_3516at 3698.518 kb on - strand, within HP15_3516at 3698.567 kb on - strand, within HP15_3516at 3698.636 kb on + strand, within HP15_3516at 3698.699 kb on - strand, within HP15_3516at 3698.703 kb on - strand, within HP15_3516at 3698.747 kb on + strand, within HP15_3516at 3698.747 kb on + strand, within HP15_3516at 3698.867 kb on + strand, within HP15_3516at 3698.935 kb on - strand, within HP15_3516at 3698.935 kb on - strand, within HP15_3516at 3698.954 kb on - strand, within HP15_3516at 3698.989 kb on + strand, within HP15_3516at 3698.997 kb on - strand, within HP15_3516at 3699.030 kb on + strand, within HP15_3516at 3699.030 kb on + strand, within HP15_3516at 3699.199 kb on + strand, within HP15_3516at 3699.207 kb on - strand, within HP15_3516at 3699.207 kb on - strand, within HP15_3516at 3699.263 kb on - strand, within HP15_3516at 3699.287 kb on - strand, within HP15_3516at 3699.387 kb on - strand, within HP15_3516at 3699.522 kb on + strandat 3699.563 kb on + strandat 3699.669 kb on - strandat 3699.754 kb on - strand, within HP15_3517at 3699.827 kb on - strand, within HP15_3517at 3700.001 kb on - strand, within HP15_3517at 3700.033 kb on + strand, within HP15_3517at 3700.041 kb on - strand, within HP15_3517at 3700.041 kb on - strand, within HP15_3517at 3700.041 kb on - strand, within HP15_3517at 3700.041 kb on - strand, within HP15_3517at 3700.171 kb on + strand, within HP15_3517at 3700.230 kb on - strand, within HP15_3517at 3700.257 kb on + strand, within HP15_3517at 3700.288 kb on - strand, within HP15_3517at 3700.418 kb on + strand, within HP15_3517at 3700.451 kb on + strandat 3700.465 kb on - strandat 3700.492 kb on - strandat 3700.531 kb on + strandat 3700.590 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,696,568 + HP15_3514 0.19 -1.6
3,696,590 + HP15_3514 0.25 -1.7
3,696,590 + HP15_3514 0.25 -2.2
3,696,678 + HP15_3514 0.49 -0.3
3,696,678 + HP15_3514 0.49 +0.4
3,696,708 - HP15_3514 0.57 -1.6
3,696,974 + HP15_3515 0.17 -0.0
3,696,982 - HP15_3515 0.18 -2.4
3,697,085 + HP15_3515 0.37 +1.5
3,697,087 - HP15_3515 0.37 -1.6
3,697,379 - -1.6
3,697,389 + -0.2
3,697,422 + +1.4
3,697,422 + -0.4
3,697,438 - -0.9
3,697,472 - -0.2
3,697,553 - -0.2
3,697,553 - -0.1
3,697,625 - -0.7
3,697,645 + -1.1
3,697,655 + -1.4
3,697,683 + -1.5
3,697,722 - -1.6
3,697,752 + HP15_3516 0.10 -2.0
3,697,797 - HP15_3516 0.12 -0.2
3,697,855 - HP15_3516 0.15 +0.7
3,697,881 - HP15_3516 0.16 -0.3
3,697,940 - HP15_3516 0.19 +0.4
3,697,940 - HP15_3516 0.19 -1.5
3,698,043 + HP15_3516 0.24 +0.1
3,698,046 - HP15_3516 0.24 -1.3
3,698,046 - HP15_3516 0.24 -1.4
3,698,159 - HP15_3516 0.30 -1.1
3,698,185 + HP15_3516 0.31 -0.5
3,698,218 + HP15_3516 0.33 +0.2
3,698,307 - HP15_3516 0.37 -1.3
3,698,418 + HP15_3516 0.43 -0.2
3,698,438 + HP15_3516 0.43 -1.4
3,698,446 - HP15_3516 0.44 -2.2
3,698,446 - HP15_3516 0.44 +0.5
3,698,495 + HP15_3516 0.46 -1.1
3,698,498 - HP15_3516 0.46 -1.6
3,698,503 - HP15_3516 0.47 -0.5
3,698,510 + HP15_3516 0.47 -0.1
3,698,518 - HP15_3516 0.47 -0.6
3,698,567 - HP15_3516 0.50 +0.0
3,698,636 + HP15_3516 0.53 +0.4
3,698,699 - HP15_3516 0.56 -2.7
3,698,703 - HP15_3516 0.56 -0.1
3,698,747 + HP15_3516 0.59 -0.6
3,698,747 + HP15_3516 0.59 -0.8
3,698,867 + HP15_3516 0.64 +0.3
3,698,935 - HP15_3516 0.68 -1.3
3,698,935 - HP15_3516 0.68 -1.8
3,698,954 - HP15_3516 0.69 -1.0
3,698,989 + HP15_3516 0.70 +0.5
3,698,997 - HP15_3516 0.71 -1.5
3,699,030 + HP15_3516 0.72 +0.4
3,699,030 + HP15_3516 0.72 -0.2
3,699,199 + HP15_3516 0.81 -0.9
3,699,207 - HP15_3516 0.81 -1.9
3,699,207 - HP15_3516 0.81 -3.1
3,699,263 - HP15_3516 0.84 -0.4
3,699,287 - HP15_3516 0.85 -2.1
3,699,387 - HP15_3516 0.90 +1.3
3,699,522 + -1.2
3,699,563 + -0.2
3,699,669 - +0.4
3,699,754 - HP15_3517 0.15 +0.6
3,699,827 - HP15_3517 0.23 +0.3
3,700,001 - HP15_3517 0.42 -0.6
3,700,033 + HP15_3517 0.46 -0.1
3,700,041 - HP15_3517 0.46 +0.4
3,700,041 - HP15_3517 0.46 -0.7
3,700,041 - HP15_3517 0.46 +0.3
3,700,041 - HP15_3517 0.46 +1.7
3,700,171 + HP15_3517 0.61 -0.1
3,700,230 - HP15_3517 0.67 +1.0
3,700,257 + HP15_3517 0.70 +0.5
3,700,288 - HP15_3517 0.74 +0.1
3,700,418 + HP15_3517 0.88 +1.1
3,700,451 + +1.0
3,700,465 - -0.8
3,700,492 - -1.3
3,700,531 + -0.5
3,700,590 - +0.1

Or see this region's nucleotide sequence