Strain Fitness in Marinobacter adhaerens HP15 around HP15_3029

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3028 and HP15_3029 are separated by 200 nucleotidesHP15_3029 and HP15_3030 are separated by 154 nucleotides HP15_3028: HP15_3028 - TRAP-type D-lactate transporter, periplasmic component (from data), at 3,172,384 to 3,173,574 _3028 HP15_3029: HP15_3029 - GntR domain protein, at 3,173,775 to 3,174,533 _3029 HP15_3030: HP15_3030 - histidine/lysine/arginine/ornithine transporter subunit, at 3,174,688 to 3,175,458 _3030 Position (kb) 3173 3174 3175Strain fitness (log2 ratio) -1 0 1 2 3at 3172.959 kb on + strand, within HP15_3028at 3173.021 kb on + strand, within HP15_3028at 3173.021 kb on + strand, within HP15_3028at 3173.024 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.029 kb on - strand, within HP15_3028at 3173.117 kb on - strand, within HP15_3028at 3173.136 kb on + strand, within HP15_3028at 3173.162 kb on + strand, within HP15_3028at 3173.162 kb on + strand, within HP15_3028at 3173.170 kb on - strand, within HP15_3028at 3173.170 kb on - strand, within HP15_3028at 3173.172 kb on + strand, within HP15_3028at 3173.175 kb on - strand, within HP15_3028at 3173.175 kb on - strand, within HP15_3028at 3173.181 kb on + strand, within HP15_3028at 3173.181 kb on + strand, within HP15_3028at 3173.189 kb on - strand, within HP15_3028at 3173.211 kb on - strand, within HP15_3028at 3173.211 kb on - strand, within HP15_3028at 3173.213 kb on + strand, within HP15_3028at 3173.221 kb on - strand, within HP15_3028at 3173.221 kb on - strand, within HP15_3028at 3173.322 kb on + strand, within HP15_3028at 3173.383 kb on + strand, within HP15_3028at 3173.386 kb on - strand, within HP15_3028at 3173.386 kb on - strand, within HP15_3028at 3173.391 kb on - strand, within HP15_3028at 3173.391 kb on - strand, within HP15_3028at 3173.391 kb on - strand, within HP15_3028at 3173.472 kb on - strandat 3173.628 kb on - strandat 3173.683 kb on - strandat 3173.687 kb on - strandat 3173.765 kb on - strandat 3173.770 kb on + strandat 3174.036 kb on + strand, within HP15_3029at 3174.289 kb on - strand, within HP15_3029at 3174.291 kb on + strand, within HP15_3029at 3174.365 kb on + strand, within HP15_3029at 3174.415 kb on - strand, within HP15_3029at 3174.417 kb on + strand, within HP15_3029at 3174.497 kb on + strandat 3174.613 kb on + strandat 3174.703 kb on + strandat 3174.711 kb on + strandat 3174.731 kb on + strandat 3174.739 kb on - strandat 3174.740 kb on + strandat 3174.741 kb on + strandat 3174.750 kb on + strandat 3174.814 kb on - strand, within HP15_3030at 3174.839 kb on + strand, within HP15_3030at 3174.839 kb on + strand, within HP15_3030at 3174.900 kb on + strand, within HP15_3030at 3174.908 kb on - strand, within HP15_3030at 3174.926 kb on - strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.128 kb on + strand, within HP15_3030at 3175.136 kb on - strand, within HP15_3030at 3175.212 kb on - strand, within HP15_3030at 3175.258 kb on + strand, within HP15_3030at 3175.260 kb on + strand, within HP15_3030at 3175.368 kb on + strand, within HP15_3030at 3175.427 kb on + strandat 3175.440 kb on - strandat 3175.465 kb on + strandat 3175.478 kb on - strandat 3175.478 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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3,172,959 + HP15_3028 0.48 +0.7
3,173,021 + HP15_3028 0.53 +0.1
3,173,021 + HP15_3028 0.53 -0.5
3,173,024 - HP15_3028 0.54 +1.2
3,173,029 - HP15_3028 0.54 +0.1
3,173,029 - HP15_3028 0.54 +0.7
3,173,029 - HP15_3028 0.54 +0.7
3,173,117 - HP15_3028 0.62 +1.9
3,173,136 + HP15_3028 0.63 +0.8
3,173,162 + HP15_3028 0.65 +0.7
3,173,162 + HP15_3028 0.65 +1.1
3,173,170 - HP15_3028 0.66 +0.2
3,173,170 - HP15_3028 0.66 +0.4
3,173,172 + HP15_3028 0.66 +0.1
3,173,175 - HP15_3028 0.66 +2.5
3,173,175 - HP15_3028 0.66 +0.2
3,173,181 + HP15_3028 0.67 -0.5
3,173,181 + HP15_3028 0.67 +2.2
3,173,189 - HP15_3028 0.68 -0.3
3,173,211 - HP15_3028 0.69 +0.5
3,173,211 - HP15_3028 0.69 -1.1
3,173,213 + HP15_3028 0.70 +0.9
3,173,221 - HP15_3028 0.70 +1.6
3,173,221 - HP15_3028 0.70 +0.4
3,173,322 + HP15_3028 0.79 +1.1
3,173,383 + HP15_3028 0.84 +1.2
3,173,386 - HP15_3028 0.84 +1.2
3,173,386 - HP15_3028 0.84 +1.8
3,173,391 - HP15_3028 0.85 +0.5
3,173,391 - HP15_3028 0.85 +0.5
3,173,391 - HP15_3028 0.85 +0.3
3,173,472 - +0.4
3,173,628 - +0.1
3,173,683 - -0.1
3,173,687 - +0.0
3,173,765 - +0.2
3,173,770 + +2.0
3,174,036 + HP15_3029 0.34 +1.9
3,174,289 - HP15_3029 0.68 +0.8
3,174,291 + HP15_3029 0.68 +2.0
3,174,365 + HP15_3029 0.78 +2.0
3,174,415 - HP15_3029 0.84 +2.9
3,174,417 + HP15_3029 0.85 +1.3
3,174,497 + +1.4
3,174,613 + -0.6
3,174,703 + -0.7
3,174,711 + +0.4
3,174,731 + +0.2
3,174,739 - -1.1
3,174,740 + +1.2
3,174,741 + +0.2
3,174,750 + +0.2
3,174,814 - HP15_3030 0.16 +1.0
3,174,839 + HP15_3030 0.20 -0.4
3,174,839 + HP15_3030 0.20 -0.3
3,174,900 + HP15_3030 0.27 +1.2
3,174,908 - HP15_3030 0.29 -0.6
3,174,926 - HP15_3030 0.31 +0.4
3,175,128 + HP15_3030 0.57 +1.4
3,175,128 + HP15_3030 0.57 +0.0
3,175,128 + HP15_3030 0.57 +0.8
3,175,136 - HP15_3030 0.58 +0.2
3,175,212 - HP15_3030 0.68 -0.2
3,175,258 + HP15_3030 0.74 +2.3
3,175,260 + HP15_3030 0.74 +1.3
3,175,368 + HP15_3030 0.88 +0.7
3,175,427 + -0.1
3,175,440 - +0.4
3,175,465 + -0.0
3,175,478 - -1.5
3,175,478 - -1.1

Or see this region's nucleotide sequence