Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3023 and HP15_3024 overlap by 8 nucleotides HP15_3024 and HP15_3025 are separated by 39 nucleotides HP15_3025 and HP15_3026 are separated by 22 nucleotides
HP15_3023: HP15_3023 - glycolate oxidase FAD binding subunit, at 3,167,031 to 3,168,098
_3023
HP15_3024: HP15_3024 - FAD linked oxidase domain protein, at 3,168,091 to 3,169,563
_3024
HP15_3025: HP15_3025 - glcG protein, at 3,169,603 to 3,170,028
_3025
HP15_3026: HP15_3026 - TRAP dicarboxylate transporter, DctM subunit, at 3,170,051 to 3,171,550
_3026
Position (kb)
3168
3169
3170 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 3167.109 kb on + strand at 3167.175 kb on - strand, within HP15_3023 at 3167.180 kb on - strand, within HP15_3023 at 3167.324 kb on - strand, within HP15_3023 at 3167.412 kb on + strand, within HP15_3023 at 3167.456 kb on - strand, within HP15_3023 at 3167.456 kb on - strand, within HP15_3023 at 3167.562 kb on - strand, within HP15_3023 at 3167.562 kb on - strand, within HP15_3023 at 3167.648 kb on - strand, within HP15_3023 at 3167.657 kb on + strand, within HP15_3023 at 3167.657 kb on + strand, within HP15_3023 at 3167.716 kb on + strand, within HP15_3023 at 3167.786 kb on + strand, within HP15_3023 at 3167.806 kb on - strand, within HP15_3023 at 3167.978 kb on - strand, within HP15_3023 at 3168.251 kb on + strand, within HP15_3024 at 3168.259 kb on - strand, within HP15_3024 at 3168.288 kb on + strand, within HP15_3024 at 3168.324 kb on + strand, within HP15_3024 at 3168.391 kb on - strand, within HP15_3024 at 3168.395 kb on - strand, within HP15_3024 at 3168.465 kb on + strand, within HP15_3024 at 3168.473 kb on - strand, within HP15_3024 at 3168.516 kb on + strand, within HP15_3024 at 3168.524 kb on - strand, within HP15_3024 at 3168.587 kb on + strand, within HP15_3024 at 3168.725 kb on + strand, within HP15_3024 at 3168.825 kb on + strand, within HP15_3024 at 3168.872 kb on - strand, within HP15_3024 at 3168.948 kb on + strand, within HP15_3024 at 3168.948 kb on + strand, within HP15_3024 at 3168.969 kb on - strand, within HP15_3024 at 3168.996 kb on + strand, within HP15_3024 at 3169.020 kb on - strand, within HP15_3024 at 3169.065 kb on - strand, within HP15_3024 at 3169.149 kb on + strand, within HP15_3024 at 3169.166 kb on + strand, within HP15_3024 at 3169.179 kb on - strand, within HP15_3024 at 3169.209 kb on + strand, within HP15_3024 at 3169.289 kb on - strand, within HP15_3024 at 3169.328 kb on - strand, within HP15_3024 at 3169.347 kb on - strand, within HP15_3024 at 3169.392 kb on + strand, within HP15_3024 at 3169.400 kb on - strand, within HP15_3024 at 3169.599 kb on + strand at 3169.599 kb on - strand at 3169.626 kb on + strand at 3169.690 kb on + strand, within HP15_3025 at 3169.797 kb on + strand, within HP15_3025 at 3169.801 kb on + strand, within HP15_3025 at 3169.814 kb on - strand, within HP15_3025 at 3169.844 kb on + strand, within HP15_3025 at 3169.936 kb on + strand, within HP15_3025 at 3170.012 kb on - strand at 3170.055 kb on + strand at 3170.103 kb on + strand at 3170.103 kb on + strand at 3170.103 kb on + strand at 3170.105 kb on + strand at 3170.111 kb on - strand at 3170.111 kb on - strand at 3170.146 kb on - strand at 3170.156 kb on - strand at 3170.195 kb on + strand at 3170.204 kb on - strand, within HP15_3026 at 3170.263 kb on - strand, within HP15_3026 at 3170.268 kb on + strand, within HP15_3026 at 3170.271 kb on - strand, within HP15_3026 at 3170.273 kb on + strand, within HP15_3026 at 3170.368 kb on + strand, within HP15_3026 at 3170.382 kb on - strand, within HP15_3026 at 3170.399 kb on - strand, within HP15_3026 at 3170.415 kb on + strand, within HP15_3026 at 3170.426 kb on + strand, within HP15_3026 at 3170.498 kb on - strand, within HP15_3026 at 3170.518 kb on - strand, within HP15_3026 at 3170.557 kb on - strand, within HP15_3026
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 3,167,109 + -1.1 3,167,175 - HP15_3023 0.13 +0.2 3,167,180 - HP15_3023 0.14 -2.7 3,167,324 - HP15_3023 0.27 -1.0 3,167,412 + HP15_3023 0.36 +0.5 3,167,456 - HP15_3023 0.40 +0.6 3,167,456 - HP15_3023 0.40 -1.7 3,167,562 - HP15_3023 0.50 -0.3 3,167,562 - HP15_3023 0.50 +0.3 3,167,648 - HP15_3023 0.58 -0.4 3,167,657 + HP15_3023 0.59 +0.1 3,167,657 + HP15_3023 0.59 -1.7 3,167,716 + HP15_3023 0.64 +0.1 3,167,786 + HP15_3023 0.71 -1.4 3,167,806 - HP15_3023 0.73 -2.7 3,167,978 - HP15_3023 0.89 -2.1 3,168,251 + HP15_3024 0.11 -1.5 3,168,259 - HP15_3024 0.11 -0.6 3,168,288 + HP15_3024 0.13 -1.7 3,168,324 + HP15_3024 0.16 -1.1 3,168,391 - HP15_3024 0.20 +0.1 3,168,395 - HP15_3024 0.21 -1.3 3,168,465 + HP15_3024 0.25 -2.5 3,168,473 - HP15_3024 0.26 -1.0 3,168,516 + HP15_3024 0.29 -0.6 3,168,524 - HP15_3024 0.29 +1.5 3,168,587 + HP15_3024 0.34 -0.2 3,168,725 + HP15_3024 0.43 -1.7 3,168,825 + HP15_3024 0.50 -1.6 3,168,872 - HP15_3024 0.53 -0.8 3,168,948 + HP15_3024 0.58 -1.8 3,168,948 + HP15_3024 0.58 -0.0 3,168,969 - HP15_3024 0.60 +0.3 3,168,996 + HP15_3024 0.61 -0.7 3,169,020 - HP15_3024 0.63 -1.2 3,169,065 - HP15_3024 0.66 -1.9 3,169,149 + HP15_3024 0.72 -1.8 3,169,166 + HP15_3024 0.73 -1.1 3,169,179 - HP15_3024 0.74 -1.3 3,169,209 + HP15_3024 0.76 -0.5 3,169,289 - HP15_3024 0.81 -1.1 3,169,328 - HP15_3024 0.84 -1.5 3,169,347 - HP15_3024 0.85 -1.3 3,169,392 + HP15_3024 0.88 +0.1 3,169,400 - HP15_3024 0.89 -0.3 3,169,599 + -0.3 3,169,599 - +1.6 3,169,626 + +2.8 3,169,690 + HP15_3025 0.20 +3.1 3,169,797 + HP15_3025 0.46 +0.6 3,169,801 + HP15_3025 0.46 +0.8 3,169,814 - HP15_3025 0.50 +1.3 3,169,844 + HP15_3025 0.57 +2.5 3,169,936 + HP15_3025 0.78 +0.5 3,170,012 - +0.9 3,170,055 + +2.2 3,170,103 + +1.0 3,170,103 + +2.1 3,170,103 + +2.2 3,170,105 + +1.7 3,170,111 - +0.1 3,170,111 - -1.0 3,170,146 - +0.3 3,170,156 - +0.3 3,170,195 + +0.1 3,170,204 - HP15_3026 0.10 -0.5 3,170,263 - HP15_3026 0.14 +0.7 3,170,268 + HP15_3026 0.14 +2.2 3,170,271 - HP15_3026 0.15 -0.1 3,170,273 + HP15_3026 0.15 +0.8 3,170,368 + HP15_3026 0.21 -0.9 3,170,382 - HP15_3026 0.22 +0.5 3,170,399 - HP15_3026 0.23 -0.1 3,170,415 + HP15_3026 0.24 +1.7 3,170,426 + HP15_3026 0.25 +0.2 3,170,498 - HP15_3026 0.30 +1.3 3,170,518 - HP15_3026 0.31 -1.0 3,170,557 - HP15_3026 0.34 +0.7
Or see this region's nucleotide sequence