Experiment: L-Glutamine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3019 and HP15_3020 are separated by 3 nucleotides HP15_3020 and HP15_3021 are separated by 12 nucleotides HP15_3021 and HP15_3022 are separated by 128 nucleotides
HP15_3019: HP15_3019 - Na+/Ca+ antiporter, CaCA family, at 3,163,652 to 3,164,623
_3019
HP15_3020: HP15_3020 - lysine exporter protein (LYSE/YGGA), at 3,164,627 to 3,165,247
_3020
HP15_3021: HP15_3021 - glycolate oxidase iron-sulfur subunit, at 3,165,260 to 3,165,691
_3021
HP15_3022: HP15_3022 - protein of unknown function cysteine-rich region domain protein, at 3,165,820 to 3,167,028
_3022
Position (kb)
3164
3165
3166 Strain fitness (log2 ratio)
-2
-1
0
1 at 3163.713 kb on - strand at 3163.805 kb on - strand, within HP15_3019 at 3163.835 kb on - strand, within HP15_3019 at 3163.865 kb on + strand, within HP15_3019 at 3163.878 kb on - strand, within HP15_3019 at 3163.951 kb on + strand, within HP15_3019 at 3163.998 kb on - strand, within HP15_3019 at 3164.010 kb on + strand, within HP15_3019 at 3164.227 kb on + strand, within HP15_3019 at 3164.246 kb on - strand, within HP15_3019 at 3164.312 kb on + strand, within HP15_3019 at 3164.393 kb on - strand, within HP15_3019 at 3164.403 kb on - strand, within HP15_3019 at 3164.403 kb on - strand, within HP15_3019 at 3164.459 kb on + strand, within HP15_3019 at 3164.474 kb on - strand, within HP15_3019 at 3164.578 kb on - strand at 3164.688 kb on - strand at 3164.696 kb on - strand, within HP15_3020 at 3165.000 kb on - strand, within HP15_3020 at 3165.000 kb on - strand, within HP15_3020 at 3165.059 kb on - strand, within HP15_3020 at 3165.064 kb on + strand, within HP15_3020 at 3165.251 kb on - strand at 3165.294 kb on - strand at 3165.398 kb on + strand, within HP15_3021 at 3165.414 kb on + strand, within HP15_3021 at 3165.422 kb on - strand, within HP15_3021 at 3165.422 kb on - strand, within HP15_3021 at 3165.438 kb on + strand, within HP15_3021 at 3165.659 kb on - strand at 3165.697 kb on + strand at 3165.704 kb on + strand at 3165.712 kb on - strand at 3165.712 kb on - strand at 3165.834 kb on + strand at 3166.076 kb on - strand, within HP15_3022 at 3166.146 kb on - strand, within HP15_3022 at 3166.196 kb on - strand, within HP15_3022
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamine as (N) remove 3,163,713 - -0.3 3,163,805 - HP15_3019 0.16 +0.4 3,163,835 - HP15_3019 0.19 -0.9 3,163,865 + HP15_3019 0.22 +0.4 3,163,878 - HP15_3019 0.23 -0.8 3,163,951 + HP15_3019 0.31 -0.1 3,163,998 - HP15_3019 0.36 +0.4 3,164,010 + HP15_3019 0.37 -0.9 3,164,227 + HP15_3019 0.59 +0.6 3,164,246 - HP15_3019 0.61 -0.5 3,164,312 + HP15_3019 0.68 +0.0 3,164,393 - HP15_3019 0.76 -0.1 3,164,403 - HP15_3019 0.77 +0.2 3,164,403 - HP15_3019 0.77 +0.9 3,164,459 + HP15_3019 0.83 +0.8 3,164,474 - HP15_3019 0.85 +0.3 3,164,578 - -1.7 3,164,688 - -0.5 3,164,696 - HP15_3020 0.11 +1.7 3,165,000 - HP15_3020 0.60 -0.1 3,165,000 - HP15_3020 0.60 +0.6 3,165,059 - HP15_3020 0.70 +0.9 3,165,064 + HP15_3020 0.70 -1.1 3,165,251 - +0.1 3,165,294 - -1.5 3,165,398 + HP15_3021 0.32 -0.8 3,165,414 + HP15_3021 0.36 -0.1 3,165,422 - HP15_3021 0.38 -1.0 3,165,422 - HP15_3021 0.38 +0.5 3,165,438 + HP15_3021 0.41 +0.4 3,165,659 - -0.2 3,165,697 + +0.7 3,165,704 + +0.5 3,165,712 - -0.9 3,165,712 - -0.2 3,165,834 + -1.4 3,166,076 - HP15_3022 0.21 +0.2 3,166,146 - HP15_3022 0.27 -2.3 3,166,196 - HP15_3022 0.31 -1.5
Or see this region's nucleotide sequence