Strain Fitness in Marinobacter adhaerens HP15 around HP15_218

Experiment: L-Glutamine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_217 and HP15_218 are separated by 122 nucleotidesHP15_218 and HP15_219 are separated by 20 nucleotidesHP15_219 and HP15_220 are separated by 150 nucleotides HP15_217: HP15_217 - glutamate--cysteine ligase, at 205,710 to 207,263 _217 HP15_218: HP15_218 - conserved hypothetical protein, at 207,386 to 207,601 _218 HP15_219: HP15_219 - flagellar basal body-associated protein FliL, at 207,622 to 208,071 _219 HP15_220: HP15_220 - disulfide bond formation protein B, at 208,222 to 208,629 _220 Position (kb) 207 208Strain fitness (log2 ratio) -1 0 1 2 3at 207.277 kb on - strandat 207.427 kb on + strand, within HP15_218at 207.455 kb on - strand, within HP15_218at 207.560 kb on - strand, within HP15_218at 208.110 kb on + strandat 208.282 kb on - strand, within HP15_220at 208.308 kb on + strand, within HP15_220at 208.444 kb on - strand, within HP15_220at 208.486 kb on - strand, within HP15_220at 208.505 kb on - strand, within HP15_220at 208.564 kb on + strand, within HP15_220at 208.572 kb on - strand, within HP15_220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
remove
207,277 - +1.5
207,427 + HP15_218 0.19 +0.7
207,455 - HP15_218 0.32 +1.7
207,560 - HP15_218 0.81 +2.5
208,110 + +0.2
208,282 - HP15_220 0.15 +0.4
208,308 + HP15_220 0.21 +2.6
208,444 - HP15_220 0.54 -0.1
208,486 - HP15_220 0.65 +2.3
208,505 - HP15_220 0.69 +3.4
208,564 + HP15_220 0.84 +0.4
208,572 - HP15_220 0.86 +0.3

Or see this region's nucleotide sequence