Strain Fitness in Marinobacter adhaerens HP15 around HP15_1594

Experiment: L-Glutamine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1593 and HP15_1594 are separated by 91 nucleotidesHP15_1594 and HP15_1595 overlap by 8 nucleotidesHP15_1595 and HP15_1596 are separated by 463 nucleotides HP15_1593: HP15_1593 - patatin-like phospholipase domain-containing protein, at 1,687,088 to 1,688,560 _1593 HP15_1594: HP15_1594 - hypothetical protein, at 1,688,652 to 1,690,559 _1594 HP15_1595: HP15_1595 - hypothetical protein, at 1,690,552 to 1,690,821 _1595 HP15_1596: HP15_1596 - D-amino acid dehydrogenase 2 small subunit, at 1,691,285 to 1,692,505 _1596 Position (kb) 1688 1689 1690 1691Strain fitness (log2 ratio) -2 -1 0 1 2at 1687.759 kb on + strand, within HP15_1593at 1687.807 kb on + strand, within HP15_1593at 1687.873 kb on + strand, within HP15_1593at 1687.880 kb on + strand, within HP15_1593at 1688.070 kb on - strand, within HP15_1593at 1688.098 kb on + strand, within HP15_1593at 1688.101 kb on + strand, within HP15_1593at 1688.122 kb on - strand, within HP15_1593at 1688.434 kb on + strandat 1688.456 kb on + strandat 1688.489 kb on - strandat 1688.541 kb on - strandat 1688.633 kb on + strandat 1688.763 kb on + strandat 1688.841 kb on + strandat 1688.860 kb on - strand, within HP15_1594at 1688.860 kb on - strand, within HP15_1594at 1688.881 kb on - strand, within HP15_1594at 1688.907 kb on - strand, within HP15_1594at 1688.961 kb on + strand, within HP15_1594at 1689.099 kb on + strand, within HP15_1594at 1689.099 kb on + strand, within HP15_1594at 1689.099 kb on + strand, within HP15_1594at 1689.107 kb on - strand, within HP15_1594at 1689.107 kb on - strand, within HP15_1594at 1689.107 kb on - strand, within HP15_1594at 1689.107 kb on - strand, within HP15_1594at 1689.275 kb on + strand, within HP15_1594at 1689.524 kb on - strand, within HP15_1594at 1689.526 kb on + strand, within HP15_1594at 1689.621 kb on + strand, within HP15_1594at 1689.815 kb on - strand, within HP15_1594at 1689.819 kb on + strand, within HP15_1594at 1689.819 kb on + strand, within HP15_1594at 1689.889 kb on + strand, within HP15_1594at 1689.934 kb on + strand, within HP15_1594at 1689.962 kb on + strand, within HP15_1594at 1689.962 kb on + strand, within HP15_1594at 1690.020 kb on + strand, within HP15_1594at 1690.051 kb on + strand, within HP15_1594at 1690.063 kb on + strand, within HP15_1594at 1690.068 kb on + strand, within HP15_1594at 1690.071 kb on - strand, within HP15_1594at 1690.071 kb on - strand, within HP15_1594at 1690.076 kb on - strand, within HP15_1594at 1690.097 kb on - strand, within HP15_1594at 1690.104 kb on + strand, within HP15_1594at 1690.251 kb on - strand, within HP15_1594at 1690.309 kb on - strand, within HP15_1594at 1690.389 kb on + strandat 1690.452 kb on - strandat 1690.454 kb on - strandat 1690.523 kb on + strandat 1690.639 kb on + strand, within HP15_1595at 1690.822 kb on - strandat 1690.903 kb on - strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1690.994 kb on + strandat 1691.002 kb on - strandat 1691.002 kb on - strandat 1691.002 kb on - strandat 1691.099 kb on + strandat 1691.208 kb on + strandat 1691.312 kb on + strandat 1691.333 kb on + strandat 1691.333 kb on + strandat 1691.341 kb on - strandat 1691.355 kb on + strandat 1691.404 kb on - strandat 1691.446 kb on + strand, within HP15_1596at 1691.478 kb on - strand, within HP15_1596at 1691.528 kb on - strand, within HP15_1596

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
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1,687,759 + HP15_1593 0.46 +0.8
1,687,807 + HP15_1593 0.49 +0.7
1,687,873 + HP15_1593 0.53 +0.7
1,687,880 + HP15_1593 0.54 +0.5
1,688,070 - HP15_1593 0.67 -0.3
1,688,098 + HP15_1593 0.69 -0.2
1,688,101 + HP15_1593 0.69 -0.4
1,688,122 - HP15_1593 0.70 -0.6
1,688,434 + -0.2
1,688,456 + +0.0
1,688,489 - +2.1
1,688,541 - -0.8
1,688,633 + -0.7
1,688,763 + +0.1
1,688,841 + +0.3
1,688,860 - HP15_1594 0.11 -0.3
1,688,860 - HP15_1594 0.11 -0.2
1,688,881 - HP15_1594 0.12 +0.0
1,688,907 - HP15_1594 0.13 -0.4
1,688,961 + HP15_1594 0.16 +0.6
1,689,099 + HP15_1594 0.23 -0.3
1,689,099 + HP15_1594 0.23 +0.1
1,689,099 + HP15_1594 0.23 -0.2
1,689,107 - HP15_1594 0.24 +0.2
1,689,107 - HP15_1594 0.24 -0.3
1,689,107 - HP15_1594 0.24 +0.4
1,689,107 - HP15_1594 0.24 -1.5
1,689,275 + HP15_1594 0.33 -0.2
1,689,524 - HP15_1594 0.46 -0.5
1,689,526 + HP15_1594 0.46 -1.2
1,689,621 + HP15_1594 0.51 -0.4
1,689,815 - HP15_1594 0.61 +1.1
1,689,819 + HP15_1594 0.61 +0.7
1,689,819 + HP15_1594 0.61 -0.7
1,689,889 + HP15_1594 0.65 +0.7
1,689,934 + HP15_1594 0.67 -0.5
1,689,962 + HP15_1594 0.69 +0.5
1,689,962 + HP15_1594 0.69 -1.0
1,690,020 + HP15_1594 0.72 +0.2
1,690,051 + HP15_1594 0.73 +0.7
1,690,063 + HP15_1594 0.74 +0.5
1,690,068 + HP15_1594 0.74 +0.6
1,690,071 - HP15_1594 0.74 -0.4
1,690,071 - HP15_1594 0.74 +2.2
1,690,076 - HP15_1594 0.75 -0.2
1,690,097 - HP15_1594 0.76 -0.1
1,690,104 + HP15_1594 0.76 -0.2
1,690,251 - HP15_1594 0.84 +1.2
1,690,309 - HP15_1594 0.87 +0.0
1,690,389 + -0.5
1,690,452 - -0.4
1,690,454 - +1.1
1,690,523 + +0.2
1,690,639 + HP15_1595 0.32 -0.5
1,690,822 - +0.6
1,690,903 - -0.2
1,690,994 + -0.1
1,690,994 + -0.8
1,690,994 + +0.4
1,690,994 + -1.0
1,691,002 - -1.7
1,691,002 - -1.1
1,691,002 - -1.1
1,691,099 + -0.8
1,691,208 + -0.5
1,691,312 + -0.3
1,691,333 + -0.1
1,691,333 + -2.5
1,691,341 - -1.7
1,691,355 + -0.0
1,691,404 - +0.2
1,691,446 + HP15_1596 0.13 -2.0
1,691,478 - HP15_1596 0.16 -1.7
1,691,528 - HP15_1596 0.20 +0.2

Or see this region's nucleotide sequence