Strain Fitness in Marinobacter adhaerens HP15 around HP15_1283

Experiment: L-Glutamine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_1282 and HP15_1283 are separated by 206 nucleotidesHP15_1283 and HP15_1284 are separated by 205 nucleotidesHP15_1284 and HP15_1285 are separated by 60 nucleotides HP15_1282: HP15_1282 - peptidase M23B, at 1,342,521 to 1,343,411 _1282 HP15_1283: HP15_1283 - RNA polymerase, sigma 70 subunit, RpoD family, at 1,343,618 to 1,344,613 _1283 HP15_1284: HP15_1284 - conserved hypothetical protein, secreted, at 1,344,819 to 1,345,394 _1284 HP15_1285: HP15_1285 - endonuclease III, at 1,345,455 to 1,346,093 _1285 Position (kb) 1343 1344 1345Strain fitness (log2 ratio) -3 -2 -1 0 1at 1342.618 kb on - strand, within HP15_1282at 1342.766 kb on - strand, within HP15_1282at 1342.778 kb on - strand, within HP15_1282at 1342.883 kb on + strand, within HP15_1282at 1343.024 kb on + strand, within HP15_1282at 1343.032 kb on - strand, within HP15_1282at 1343.056 kb on + strand, within HP15_1282at 1343.179 kb on - strand, within HP15_1282at 1343.242 kb on + strand, within HP15_1282at 1343.311 kb on - strand, within HP15_1282at 1343.431 kb on - strandat 1343.448 kb on + strandat 1343.448 kb on + strandat 1343.448 kb on + strandat 1343.743 kb on - strand, within HP15_1283at 1343.775 kb on + strand, within HP15_1283at 1343.775 kb on + strand, within HP15_1283at 1343.793 kb on + strand, within HP15_1283at 1343.877 kb on + strand, within HP15_1283at 1343.924 kb on - strand, within HP15_1283at 1343.969 kb on + strand, within HP15_1283at 1343.994 kb on + strand, within HP15_1283at 1343.994 kb on + strand, within HP15_1283at 1343.997 kb on - strand, within HP15_1283at 1344.004 kb on + strand, within HP15_1283at 1344.012 kb on - strand, within HP15_1283at 1344.012 kb on - strand, within HP15_1283at 1344.341 kb on + strand, within HP15_1283at 1344.390 kb on - strand, within HP15_1283at 1344.396 kb on + strand, within HP15_1283at 1344.495 kb on - strand, within HP15_1283at 1344.538 kb on - strandat 1344.750 kb on + strandat 1344.750 kb on + strandat 1344.758 kb on - strandat 1344.864 kb on + strandat 1344.978 kb on - strand, within HP15_1284at 1345.195 kb on - strand, within HP15_1284at 1345.383 kb on + strandat 1345.512 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamine as (N)
remove
1,342,618 - HP15_1282 0.11 +0.7
1,342,766 - HP15_1282 0.27 +0.4
1,342,778 - HP15_1282 0.29 +0.6
1,342,883 + HP15_1282 0.41 +0.6
1,343,024 + HP15_1282 0.56 +0.8
1,343,032 - HP15_1282 0.57 +0.8
1,343,056 + HP15_1282 0.60 +0.9
1,343,179 - HP15_1282 0.74 -0.1
1,343,242 + HP15_1282 0.81 +0.4
1,343,311 - HP15_1282 0.89 -0.7
1,343,431 - -0.3
1,343,448 + -0.6
1,343,448 + -0.6
1,343,448 + +0.5
1,343,743 - HP15_1283 0.13 +0.8
1,343,775 + HP15_1283 0.16 -0.4
1,343,775 + HP15_1283 0.16 -0.0
1,343,793 + HP15_1283 0.18 -3.7
1,343,877 + HP15_1283 0.26 -0.8
1,343,924 - HP15_1283 0.31 -0.6
1,343,969 + HP15_1283 0.35 -2.4
1,343,994 + HP15_1283 0.38 -2.7
1,343,994 + HP15_1283 0.38 -2.5
1,343,997 - HP15_1283 0.38 -1.8
1,344,004 + HP15_1283 0.39 -1.9
1,344,012 - HP15_1283 0.40 -1.0
1,344,012 - HP15_1283 0.40 -2.2
1,344,341 + HP15_1283 0.73 -1.5
1,344,390 - HP15_1283 0.78 -0.9
1,344,396 + HP15_1283 0.78 -0.8
1,344,495 - HP15_1283 0.88 -2.8
1,344,538 - -2.0
1,344,750 + +1.3
1,344,750 + +0.4
1,344,758 - +0.3
1,344,864 + +0.5
1,344,978 - HP15_1284 0.28 +0.2
1,345,195 - HP15_1284 0.65 +1.3
1,345,383 + -0.2
1,345,512 + -0.1

Or see this region's nucleotide sequence