Experiment: rich MoYLS4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2831 and atpC are separated by 10 nucleotides atpC and DvMF_2833 are separated by 533 nucleotides DvMF_2833 and DvMF_2834 are separated by 555 nucleotides
DvMF_2831: DvMF_2831 - F0F1 ATP synthase subunit beta (RefSeq), at 3,576,180 to 3,577,595
_2831
DvMF_2832: atpC - F0F1 ATP synthase subunit epsilon (RefSeq), at 3,577,606 to 3,578,010
atpC
DvMF_2833: DvMF_2833 - hypothetical protein (RefSeq), at 3,578,544 to 3,578,780
_2833
DvMF_2834: DvMF_2834 - hypothetical protein (RefSeq), at 3,579,336 to 3,579,683
_2834
Position (kb)
3578
3579 Strain fitness (log2 ratio)
-1
0
1 at 3577.895 kb on + strand, within atpC at 3578.015 kb on + strand at 3578.158 kb on + strand at 3578.238 kb on + strand at 3578.368 kb on - strand at 3578.393 kb on - strand at 3578.483 kb on + strand at 3578.491 kb on + strand at 3578.491 kb on - strand at 3578.579 kb on + strand, within DvMF_2833 at 3578.579 kb on + strand, within DvMF_2833 at 3578.714 kb on - strand, within DvMF_2833 at 3578.900 kb on + strand at 3579.022 kb on - strand at 3579.022 kb on - strand at 3579.118 kb on + strand at 3579.151 kb on + strand at 3579.153 kb on + strand at 3579.494 kb on + strand, within DvMF_2834 at 3579.496 kb on + strand, within DvMF_2834
Per-strain Table
Position Strand Gene LocusTag Fraction rich MoYLS4 remove 3,577,895 + atpC DvMF_2832 0.71 -0.4 3,578,015 + -0.6 3,578,158 + -0.1 3,578,238 + -0.7 3,578,368 - -0.2 3,578,393 - -0.5 3,578,483 + -0.0 3,578,491 + +0.5 3,578,491 - +0.7 3,578,579 + DvMF_2833 0.15 -0.2 3,578,579 + DvMF_2833 0.15 -1.0 3,578,714 - DvMF_2833 0.72 -0.4 3,578,900 + -0.6 3,579,022 - -0.4 3,579,022 - -0.3 3,579,118 + -0.3 3,579,151 + -0.1 3,579,153 + -0.6 3,579,494 + DvMF_2834 0.45 +0.3 3,579,496 + DvMF_2834 0.46 -0.4
Or see this region's nucleotide sequence