Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2123

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2122 and DvMF_2123 are separated by 384 nucleotidesDvMF_2123 and DvMF_2124 are separated by 236 nucleotides DvMF_2122: DvMF_2122 - nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase (RefSeq), at 2,640,719 to 2,641,798 _2122 DvMF_2123: DvMF_2123 - chromosome replication initiation inhibitor protein (RefSeq), at 2,642,183 to 2,643,145 _2123 DvMF_2124: DvMF_2124 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,643,382 to 2,644,011 _2124 Position (kb) 2642 2643 2644Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2641.300 kb on - strand, within DvMF_2122at 2641.305 kb on - strand, within DvMF_2122at 2641.903 kb on - strandat 2642.236 kb on - strandat 2642.265 kb on - strandat 2642.276 kb on - strandat 2642.454 kb on - strand, within DvMF_2123at 2642.455 kb on + strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123at 2642.542 kb on - strand, within DvMF_2123at 2642.981 kb on + strand, within DvMF_2123at 2643.209 kb on + strandat 2643.209 kb on + strandat 2643.217 kb on - strandat 2643.256 kb on + strandat 2643.292 kb on + strandat 2643.465 kb on + strand, within DvMF_2124at 2643.930 kb on - strand, within DvMF_2124at 2643.963 kb on + strandat 2644.055 kb on + strandat 2644.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,641,300 - DvMF_2122 0.54 -4.8
2,641,305 - DvMF_2122 0.54 -2.9
2,641,903 - +0.2
2,642,236 - +0.2
2,642,265 - -0.3
2,642,276 - +0.0
2,642,454 - DvMF_2123 0.28 -0.1
2,642,455 + DvMF_2123 0.28 -0.2
2,642,542 - DvMF_2123 0.37 -0.3
2,642,542 - DvMF_2123 0.37 -0.2
2,642,981 + DvMF_2123 0.83 -0.9
2,643,209 + -0.3
2,643,209 + -0.1
2,643,217 - +0.2
2,643,256 + -0.3
2,643,292 + -0.0
2,643,465 + DvMF_2124 0.13 -0.1
2,643,930 - DvMF_2124 0.87 -0.3
2,643,963 + -0.2
2,644,055 + -0.2
2,644,063 - -0.1

Or see this region's nucleotide sequence