Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2119

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2117 and DvMF_2118 overlap by 11 nucleotidesDvMF_2118 and DvMF_2119 are separated by 2 nucleotidesDvMF_2119 and DvMF_2120 are separated by 469 nucleotidesDvMF_2120 and DvMF_2121 are separated by 295 nucleotides DvMF_2117: DvMF_2117 - Tetratricopeptide TPR_2 repeat protein (RefSeq), at 2,636,166 to 2,636,789 _2117 DvMF_2118: DvMF_2118 - hypothetical protein (RefSeq), at 2,636,779 to 2,637,171 _2118 DvMF_2119: DvMF_2119 - hypothetical protein (RefSeq), at 2,637,174 to 2,637,842 _2119 DvMF_2120: DvMF_2120 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 2,638,312 to 2,638,500 _2120 DvMF_2121: DvMF_2121 - 2-alkenal reductase (RefSeq), at 2,638,796 to 2,640,373 _2121 Position (kb) 2637 2638Strain fitness (log2 ratio) -2 -1 0 1at 2637.651 kb on - strand, within DvMF_2119at 2637.959 kb on - strandat 2638.145 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,637,651 - DvMF_2119 0.71 -2.7
2,637,959 - -0.7
2,638,145 + +0.3

Or see this region's nucleotide sequence