Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2076

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2075 and DvMF_2076 are separated by 571 nucleotides DvMF_2075: DvMF_2075 - fumarate hydratase, class II (RefSeq), at 2,576,452 to 2,578,038 _2075 DvMF_2076: DvMF_2076 - GPR1/FUN34/yaaH family protein (RefSeq), at 2,578,610 to 2,579,161 _2076 Position (kb) 2578 2579 2580Strain fitness (log2 ratio) -1 0 1at 2577.611 kb on - strand, within DvMF_2075at 2577.611 kb on - strand, within DvMF_2075at 2577.648 kb on + strand, within DvMF_2075at 2577.655 kb on + strand, within DvMF_2075at 2577.656 kb on - strand, within DvMF_2075at 2577.882 kb on + strandat 2577.926 kb on + strandat 2577.932 kb on - strandat 2577.932 kb on - strandat 2577.934 kb on - strandat 2577.936 kb on + strandat 2578.024 kb on + strandat 2578.079 kb on - strandat 2578.278 kb on + strandat 2578.485 kb on - strandat 2578.502 kb on - strandat 2578.582 kb on + strandat 2578.794 kb on - strand, within DvMF_2076at 2578.920 kb on + strand, within DvMF_2076at 2578.936 kb on - strand, within DvMF_2076at 2578.971 kb on - strand, within DvMF_2076at 2579.120 kb on + strandat 2579.652 kb on + strandat 2579.975 kb on + strandat 2580.016 kb on - strandat 2580.061 kb on - strandat 2580.066 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,577,611 - DvMF_2075 0.73 -0.1
2,577,611 - DvMF_2075 0.73 -0.1
2,577,648 + DvMF_2075 0.75 -0.2
2,577,655 + DvMF_2075 0.76 -0.2
2,577,656 - DvMF_2075 0.76 -0.8
2,577,882 + +0.0
2,577,926 + -0.1
2,577,932 - -0.1
2,577,932 - -0.1
2,577,934 - -0.4
2,577,936 + -0.3
2,578,024 + -0.9
2,578,079 - -0.1
2,578,278 + -0.2
2,578,485 - -0.1
2,578,502 - -0.1
2,578,582 + -1.0
2,578,794 - DvMF_2076 0.33 -0.6
2,578,920 + DvMF_2076 0.56 -0.1
2,578,936 - DvMF_2076 0.59 -0.8
2,578,971 - DvMF_2076 0.65 -1.0
2,579,120 + -0.3
2,579,652 + -0.4
2,579,975 + -0.2
2,580,016 - -0.2
2,580,061 - +0.0
2,580,066 - -0.4

Or see this region's nucleotide sequence