Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2074

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2073 and DvMF_2074 are separated by 168 nucleotidesDvMF_2074 and DvMF_2075 are separated by 652 nucleotides DvMF_2073: DvMF_2073 - hypothetical protein (RefSeq), at 2,573,304 to 2,574,506 _2073 DvMF_2074: DvMF_2074 - glycosyl transferase family 2 (RefSeq), at 2,574,675 to 2,575,799 _2074 DvMF_2075: DvMF_2075 - fumarate hydratase, class II (RefSeq), at 2,576,452 to 2,578,038 _2075 Position (kb) 2574 2575 2576Strain fitness (log2 ratio) -1 0 1at 2573.791 kb on - strand, within DvMF_2073at 2573.822 kb on + strand, within DvMF_2073at 2574.043 kb on - strand, within DvMF_2073at 2574.043 kb on - strand, within DvMF_2073at 2574.103 kb on - strand, within DvMF_2073at 2574.313 kb on - strand, within DvMF_2073at 2574.575 kb on - strandat 2574.703 kb on - strandat 2574.763 kb on - strandat 2574.779 kb on + strandat 2574.943 kb on - strand, within DvMF_2074at 2574.962 kb on - strand, within DvMF_2074at 2574.990 kb on + strand, within DvMF_2074at 2574.997 kb on + strand, within DvMF_2074at 2575.005 kb on - strand, within DvMF_2074at 2575.066 kb on + strand, within DvMF_2074at 2575.080 kb on + strand, within DvMF_2074at 2575.088 kb on - strand, within DvMF_2074at 2575.113 kb on - strand, within DvMF_2074at 2575.128 kb on - strand, within DvMF_2074at 2575.128 kb on - strand, within DvMF_2074at 2575.213 kb on + strand, within DvMF_2074at 2575.389 kb on - strand, within DvMF_2074at 2575.532 kb on + strand, within DvMF_2074at 2575.640 kb on + strand, within DvMF_2074at 2575.662 kb on + strand, within DvMF_2074at 2575.704 kb on - strandat 2575.746 kb on - strandat 2575.964 kb on - strandat 2575.966 kb on + strandat 2576.015 kb on + strandat 2576.089 kb on - strandat 2576.123 kb on + strandat 2576.268 kb on - strandat 2576.371 kb on - strandat 2576.470 kb on - strandat 2576.472 kb on + strandat 2576.506 kb on - strandat 2576.605 kb on - strandat 2576.613 kb on + strand, within DvMF_2075at 2576.680 kb on + strand, within DvMF_2075at 2576.684 kb on + strand, within DvMF_2075at 2576.755 kb on + strand, within DvMF_2075

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,573,791 - DvMF_2073 0.40 +0.7
2,573,822 + DvMF_2073 0.43 -0.5
2,574,043 - DvMF_2073 0.61 -0.2
2,574,043 - DvMF_2073 0.61 -0.7
2,574,103 - DvMF_2073 0.66 +0.1
2,574,313 - DvMF_2073 0.84 -0.0
2,574,575 - -0.0
2,574,703 - -0.7
2,574,763 - -0.4
2,574,779 + +0.5
2,574,943 - DvMF_2074 0.24 -0.1
2,574,962 - DvMF_2074 0.26 -0.2
2,574,990 + DvMF_2074 0.28 -0.6
2,574,997 + DvMF_2074 0.29 -0.4
2,575,005 - DvMF_2074 0.29 -0.1
2,575,066 + DvMF_2074 0.35 -0.4
2,575,080 + DvMF_2074 0.36 -0.6
2,575,088 - DvMF_2074 0.37 -0.3
2,575,113 - DvMF_2074 0.39 -0.3
2,575,128 - DvMF_2074 0.40 +0.0
2,575,128 - DvMF_2074 0.40 +0.4
2,575,213 + DvMF_2074 0.48 -0.4
2,575,389 - DvMF_2074 0.63 +0.4
2,575,532 + DvMF_2074 0.76 -0.0
2,575,640 + DvMF_2074 0.86 -0.2
2,575,662 + DvMF_2074 0.88 -0.3
2,575,704 - -0.2
2,575,746 - -0.3
2,575,964 - -0.2
2,575,966 + +0.1
2,576,015 + -0.3
2,576,089 - -0.3
2,576,123 + -0.1
2,576,268 - +0.2
2,576,371 - -0.4
2,576,470 - -0.2
2,576,472 + -0.5
2,576,506 - -0.3
2,576,605 - -0.4
2,576,613 + DvMF_2075 0.10 +0.4
2,576,680 + DvMF_2075 0.14 -0.1
2,576,684 + DvMF_2075 0.15 -0.6
2,576,755 + DvMF_2075 0.19 -0.2

Or see this region's nucleotide sequence