Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1991

Experiment: rich MoYLS4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1990 and DvMF_1991 are separated by 35 nucleotidesDvMF_1991 and DvMF_1992 are separated by 332 nucleotides DvMF_1990: DvMF_1990 - Pyruvate, water dikinase (RefSeq), at 2,464,945 to 2,467,740 _1990 DvMF_1991: DvMF_1991 - response regulator receiver protein (RefSeq), at 2,467,776 to 2,468,237 _1991 DvMF_1992: DvMF_1992 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,468,570 to 2,469,688 _1992 Position (kb) 2467 2468 2469Strain fitness (log2 ratio) -3 -2 -1 0 1at 2466.779 kb on + strand, within DvMF_1990at 2466.889 kb on - strand, within DvMF_1990at 2466.890 kb on + strand, within DvMF_1990at 2467.388 kb on - strand, within DvMF_1990at 2467.510 kb on - strandat 2467.512 kb on + strandat 2468.281 kb on + strandat 2468.388 kb on + strandat 2468.388 kb on + strandat 2468.404 kb on - strandat 2468.423 kb on + strandat 2468.864 kb on - strand, within DvMF_1992at 2468.990 kb on - strand, within DvMF_1992at 2469.056 kb on - strand, within DvMF_1992at 2469.220 kb on - strand, within DvMF_1992at 2469.225 kb on + strand, within DvMF_1992

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Per-strain Table

Position Strand Gene LocusTag Fraction rich MoYLS4
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2,466,779 + DvMF_1990 0.66 -1.8
2,466,889 - DvMF_1990 0.70 -2.9
2,466,890 + DvMF_1990 0.70 -1.6
2,467,388 - DvMF_1990 0.87 -1.6
2,467,510 - -2.1
2,467,512 + -2.6
2,468,281 + -0.0
2,468,388 + +0.1
2,468,388 + -0.3
2,468,404 - -0.5
2,468,423 + -0.1
2,468,864 - DvMF_1992 0.26 -0.9
2,468,990 - DvMF_1992 0.38 -0.9
2,469,056 - DvMF_1992 0.43 -0.1
2,469,220 - DvMF_1992 0.58 -1.6
2,469,225 + DvMF_1992 0.59 -1.8

Or see this region's nucleotide sequence